Difference between revisions of "YonT"

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(Expression and regulation)
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* '''Effectors of protein activity:'''
 
* '''Effectors of protein activity:'''
  
* '''Interactions:'''
+
* '''[[SubtInteract|Interactions]]:'''  
  
* '''Localization:'''
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* '''[[Localization]]:'''
  
 
=== Database entries ===
 
=== Database entries ===
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* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=yonT_2219784_2219960_-1 yonT] {{PubMed|22383849}}
 
* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=yonT_2219784_2219960_-1 yonT] {{PubMed|22383849}}
  
* '''Sigma factor:'''  
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* '''[[Sigma factor]]:'''  
  
 
* '''Regulation:'''  
 
* '''Regulation:'''  
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=References=
 
=References=
'''Additional publications:''' {{PubMed|23300471}}
+
<big>''Durand S, Gilet L, Condon C''  </big>
 +
<big>'''The essential function of ''B. subtilis'' RNase III is to silence foreign toxin genes.''' </big>
 +
<big>PLoS Genet. 2012 8(12): e1003181.</big>
 +
[http://www.ncbi.nlm.nih.gov/pubmed/23300471 PubMed:23300471]
 
<pubmed> 20156992 19210617</pubmed>
 
<pubmed> 20156992 19210617</pubmed>
 
[[Category:Protein-coding genes]]
 
[[Category:Protein-coding genes]]

Revision as of 15:40, 5 February 2013

  • Description: toxin

Gene name yonT
Synonyms
Essential no
Product toxin
Function unknown
Gene expression levels in SubtiExpress: yonT
MW, pI 6 kDa, 12.857
Gene length, protein length 174 bp, 58 aa
Immediate neighbours as-yonT, yonS
Get the DNA and protein sequences
(Barbe et al., 2009)
Genetic context
YonT context.gif
This image was kindly provided by SubtiList
Expression at a glance   PubMed
YonT expression.png















Categories containing this gene/protein

toxins, antitoxins and immunity against toxins, SP-beta prophage

This gene is a member of the following regulons

as-yonT regulon

The gene

Basic information

  • Locus tag: BSU21000

Phenotypes of a mutant

Database entries

  • DBTBS entry: no entry
  • SubtiList entry: [1]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Protein family: panD family (according to Swiss-Prot)
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:

Database entries

  • Structure:
  • KEGG entry: [2]
  • E.C. number:

Additional information

Expression and regulation

  • Operon:
  • Regulatory mechanism:
  • Additional information:
    • next to txpA, the yonT mRNA has the strongest Shine-Dalgarno region in B. subtilis PubMed

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

Durand S, Gilet L, Condon C  
The essential function of B. subtilis RNase III is to silence foreign toxin genes. 
PLoS Genet. 2012 8(12): e1003181.
PubMed:23300471