Difference between revisions of "YojM"

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|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[yojN]]'', ''[[cwlS]]''
 
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[yojN]]'', ''[[cwlS]]''
 
|-
 
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|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU19400 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU19400 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU19400 Advanced_DNA]
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|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU19400 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU19400 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU19400 DNA_with_flanks]
 
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|colspan="2" | '''Genetic context''' <br/> [[Image:yojM_context.gif]]
 
|colspan="2" | '''Genetic context''' <br/> [[Image:yojM_context.gif]]

Revision as of 10:25, 14 May 2013

  • Description: superoxide dismutase

Gene name yojM
Synonyms
Essential no
Product superoxide dismutase
Function unknown
Gene expression levels in SubtiExpress: yojM
MW, pI 20 kDa, 5.636
Gene length, protein length 588 bp, 196 aa
Immediate neighbours yojN, cwlS
Sequences Protein DNA DNA_with_flanks
Genetic context
YojM context.gif
This image was kindly provided by SubtiList
Expression at a glance   PubMed
YojM expression.png















Categories containing this gene/protein

resistance against oxidative and electrophile stress

This gene is a member of the following regulons

The gene

Basic information

  • Locus tag: BSU19400

Phenotypes of a mutant

Database entries

  • DBTBS entry: no entry
  • SubtiList entry: [1]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Protein family: alpha-ketoglutarate dehydrogenase family (according to Swiss-Prot)
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s): zinc
  • Effectors of protein activity:

Database entries

  • KEGG entry: [2]
  • E.C. number:

Additional information

Expression and regulation

  • Operon:
  • Regulation:
  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

Lucia Banci, Ivano Bertini, Vito Calderone, Fiorenza Cramaro, Rebecca Del Conte, Adele Fantoni, Stefano Mangani, Alessandro Quattrone, Maria Silvia Viezzoli
A prokaryotic superoxide dismutase paralog lacking two Cu ligands: from largely unstructured in solution to ordered in the crystal.
Proc Natl Acad Sci U S A: 2005, 102(21);7541-6
[PubMed:15897454] [WorldCat.org] [DOI] (P p)