Difference between revisions of "YodF"

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|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[mhqE]]'', ''[[ctpA]]''
 
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[mhqE]]'', ''[[ctpA]]''
 
|-
 
|-
|style="background:#FAF8CC;" align="center"|'''[http://subtiwiki.uni-goettingen.de/yodF_nucleotide.txt    Gene sequence      (+200bp)  ]'''
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|colspan="2" style="background:#FAF8CC;" align="center"|'''Get the DNA and protein [http://srs.ebi.ac.uk/srsbin/cgi-bin/wgetz?-e+&#91;EMBLCDS:CAB13849&#93;+-newId sequences] <br/> (Barbe ''et al.'', 2009)'''
|style="background:#FAF8CC;" align="center"|'''[http://subtiwiki.uni-goettingen.de/yodF_protein.txt Protein sequence]'''
 
 
|-
 
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|colspan="2" | '''Genetic context''' <br/> [[Image:yodF_context.gif]]
 
|colspan="2" | '''Genetic context''' <br/> [[Image:yodF_context.gif]]

Revision as of 02:48, 17 April 2009

  • Description: similar to proline permease

Gene name yodF
Synonyms
Essential no
Product unknown
Function unknown
MW, pI 53 kDa, 9.682
Gene length, protein length 1488 bp, 496 aa
Immediate neighbours mhqE, ctpA
Get the DNA and protein sequences
(Barbe et al., 2009)
Genetic context
YodF context.gif
This image was kindly provided by SubtiList



The gene

Basic information

  • Coordinates:

Phenotypes of a mutant

Database entries

  • DBTBS entry: no entry
  • SubtiList entry: [1]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Protein family:
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:
  • Interactions:
  • Localization: membrane PubMed

Database entries

  • Structure:
  • Swiss prot entry:
  • KEGG entry: [2]
  • E.C. number:

Additional information

Expression and regulation

  • Operon:
  • Regulation: repressed by casamino acids PubMed
  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

  1. Mäder et al. (2002) Transcriptome and Proteome Analysis of Bacillus subtilis Gene Expression Modulated by Amino Acid Availability. J. Bacteriol 184: 1844288-4295 PubMed
  2. Hahne et al. (2008) From complementarity to comprehensiveness - targeting the membrane proteome of growing Bacillus subtilis by divergent approaches. Proteomics 8: 4123-4136 PubMed
  3. Author1, Author2 & Author3 (year) Title Journal volume: page-page. PubMed