yodF

yodF
168

similar to amino acid permease

locus
BSU_19580
Molecular weight
53.60 kDa
pI
9.68
Protein length
Gene length
function
unknown
product
unknown
essential
no
synonyms
yodF

Genomic Context

Categories containing this gene/protein

List of homologs in different organisms, belongs to COG0591 (Galperin et al., 2021)

This gene is a member of the following regulons

Gene
Coordinates
2,130,377  2,131,867
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The protein
Catalyzed reaction/ biological activity
in some database, the protein is annotated as being similar to proline permease, however, it is not involved in proline transport  [Pubmed|24142252]
Protein family
[wiki|sodium:solute symporter (SSF) (TC 2.A.21) family] (according to UniProt)
Structure
[AF|O34745]
Paralogous protein(s)
[protein|EFA18ACD034D48868CD97470F81F23976DA300DF|yhjB]
[wiki|Localization]
membrane [Pubmed|18763711]
Expression and Regulation
Operons
genes
[gene|80D8589800BC9BA6743534311B6F227A37E7DB2D|yoyD]-[gene|7E86EB6FF86F2C4AE3FD11DB8CE8E71696D94B1B|yodF]
description
[Pubmed|22383849]
regulation
expression during spore [wiki|germination] is strongly reduced under conditions of osmotic stress [Pubmed|27766092]
regulatory mechanism
[protein|857EF1AC54DEA0690C01B7F8CEFFD16312C58F20|tnrA]: repression, [Pubmed|25755103,12823818], in [regulon|protein:857EF1AC54DEA0690C01B7F8CEFFD16312C58F20|tnrA regulon]
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[gene|80D8589800BC9BA6743534311B6F227A37E7DB2D|yoyD]→[gene|7E86EB6FF86F2C4AE3FD11DB8CE8E71696D94B1B|yodF]

2024-03-21 10:26:13

Jstuelk

57

b76413b76ac27cfae173804cefdd15b557151c91

D12707CF2D2A93BAD912E1DAA79938D08A9A2A7C

Biological materials
Mutant
MGNA-B437 (yodF::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/1436 NBRP B. subtilis, Japan]
GP1887 Δ[gene|7E86EB6FF86F2C4AE3FD11DB8CE8E71696D94B1B|yodF]::kan, available in [wiki|Jörg Stülke]'s lab [pubmed|32743959]
GP3569 Δ[gene|7E86EB6FF86F2C4AE3FD11DB8CE8E71696D94B1B|yodF]::phleo, available in [wiki|Jörg Stülke]'s lab
GP3570 Δ[gene|7E86EB6FF86F2C4AE3FD11DB8CE8E71696D94B1B|yodF]::cat, available in [wiki|Jörg Stülke]'s lab
BKE19580 ([gene|7E86EB6FF86F2C4AE3FD11DB8CE8E71696D94B1B|yodF]::erm  trpC2) available at [http://bgsc.org/getdetail.php?bgscid=BKE19580 BGSC],  [Pubmed|28189581], upstream reverse: _UP1_AAGTGCAGTCAGATTCCCTT,  downstream forward: _UP4_TAAAAAAACCATACGCGGCA
BKK19580 ([gene|7E86EB6FF86F2C4AE3FD11DB8CE8E71696D94B1B|yodF]::kan  trpC2) available at [http://bgsc.org/getdetail.php?bgscid=BKK19580 BGSC],  [Pubmed|28189581], upstream reverse: _UP1_AAGTGCAGTCAGATTCCCTT,  downstream forward: _UP4_TAAAAAAACCATACGCGGCA
References
12823818,22383849,12107147,18763711,24142252,25755103

7E86EB6FF86F2C4AE3FD11DB8CE8E71696D94B1B

Page visits: 4086

Time of last update: 2024-03-28 09:27:45

Author of last update: MBenda