Difference between revisions of "YobO"

From SubtiWiki
Jump to: navigation, search
Line 14: Line 14:
 
|style="background:#ABCDEF;" align="center"|'''Function''' || unknown
 
|style="background:#ABCDEF;" align="center"|'''Function''' || unknown
 
|-
 
|-
|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://cellpublisher.gobics.de/subtiexpress/ ''Subti''Express]''': [http://cellpublisher.gobics.de/subtiexpress/bsu/BSU19030 yobO]
+
|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU19030 yobO]
 
|-
 
|-
 
|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 87 kDa, 5.574   
 
|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 87 kDa, 5.574   
Line 22: Line 22:
 
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[yobN]]'', ''[[bsrF]]''
 
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[yobN]]'', ''[[bsrF]]''
 
|-
 
|-
|colspan="2" style="background:#FAF8CC;" align="center"|'''Get the DNA and protein [http://srs.ebi.ac.uk/srsbin/cgi-bin/wgetz?-e+&#91;EMBLCDS:CAB13795&#93;+-newId sequences] <br/> (Barbe ''et al.'', 2009)'''
+
|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU19030 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU19030 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU19030 Advanced_DNA]
 
|-
 
|-
 
|colspan="2" | '''Genetic context''' <br/> [[Image:yobO_context.gif]]
 
|colspan="2" | '''Genetic context''' <br/> [[Image:yobO_context.gif]]

Revision as of 13:00, 13 May 2013

  • Description: similar to phage-related pre-neck appendage protein

Gene name yobO
Synonyms
Essential no
Product unknown
Function unknown
Gene expression levels in SubtiExpress: yobO
MW, pI 87 kDa, 5.574
Gene length, protein length 2418 bp, 806 aa
Immediate neighbours yobN, bsrF
Sequences Protein DNA Advanced_DNA
Genetic context
YobO context.gif
This image was kindly provided by SubtiList
Expression at a glance   PubMed
YobO expression.png















Categories containing this gene/protein

proteins of unknown function

This gene is a member of the following regulons

AbrB regulon, CcpA regulon

The gene

Basic information

  • Locus tag: BSU19030

Phenotypes of a mutant

Database entries

  • DBTBS entry: [1]
  • SubtiList entry: [2]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Protein family:
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:

Database entries

  • Structure:
  • KEGG entry: [3]
  • E.C. number:

Additional information

Expression and regulation

  • Operon: yobO (according to DBTBS)
  • Regulation:
    • subject to carbon catabolite repression (CcpA) PubMed
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

Additional publications: PubMed

Y Miwa, A Nakata, A Ogiwara, M Yamamoto, Y Fujita
Evaluation and characterization of catabolite-responsive elements (cre) of Bacillus subtilis.
Nucleic Acids Res: 2000, 28(5);1206-10
[PubMed:10666464] [WorldCat.org] [DOI] (I p)