Difference between revisions of "YmcA"

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Line 78: Line 78:
 
* '''Structure:''' [http://www.rcsb.org/pdb/explore.do?structureId=2PIH 2PIH]
 
* '''Structure:''' [http://www.rcsb.org/pdb/explore.do?structureId=2PIH 2PIH]
  
* '''Swiss prot entry:''' [http://www.uniprot.org/uniprot/O31779 O31779]
+
* '''UniProt:''' [http://www.uniprot.org/uniprot/O31779 O31779]
  
 
* '''KEGG entry:''' [http://www.genome.jp/dbget-bin/www_bget?bsu:BSU17020]
 
* '''KEGG entry:''' [http://www.genome.jp/dbget-bin/www_bget?bsu:BSU17020]

Revision as of 12:53, 20 July 2009

  • Description: antagonist of biofilm repression by SinR

Gene name ymcA
Synonyms
Essential no
Product antagonist of biofilm repression by SinR
Function regulation of biofilm formation
MW, pI 16 kDa, 5.086
Gene length, protein length 429 bp, 143 aa
Immediate neighbours ymcB, cotE
Get the DNA and protein sequences
(Barbe et al., 2009)
Genetic context
YmcA context.gif
This image was kindly provided by SubtiList



The gene

Basic information

  • Locus tag: BSU17020

Phenotypes of a mutant

Database entries

  • DBTBS entry: no entry
  • SubtiList entry: [1]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Protein family:
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:
  • Interactions:
  • Localization:

Database entries

  • KEGG entry: [2]
  • E.C. number:

Additional information

Expression and regulation

  • Operon:
  • Regulation:
  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

Daniel B Kearns, Frances Chu, Steven S Branda, Roberto Kolter, Richard Losick
A master regulator for biofilm formation by Bacillus subtilis.
Mol Microbiol: 2005, 55(3);739-49
[PubMed:15661000] [WorldCat.org] [DOI] (P p)

Steven S Branda, José Eduardo González-Pastor, Etienne Dervyn, S Dusko Ehrlich, Richard Losick, Roberto Kolter
Genes involved in formation of structured multicellular communities by Bacillus subtilis.
J Bacteriol: 2004, 186(12);3970-9
[PubMed:15175311] [WorldCat.org] [DOI] (P p)