ymaB

ymaB
168

putative [wiki|Nudix hydrolase], has RNA pyrophosphohydrolase activity

locus
BSU_17400
Molecular weight
23.24 kDa
pI
4.51
Protein length
Gene length
function
unknown
product
unknown
essential
no
synonyms
ymaB

Genomic Context

Categories containing this gene/protein

List of homologs in different organisms, belongs to COG4112 (Galperin et al., 2021)

This gene is a member of the following regulons

Gene
Coordinates
1,872,128  1,872,748
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The protein
Structure
[PDB|3E57] (from ''Thermotoga maritima'', 35% identity)
[AF|P50619]
Expression and Regulation
Operons
genes
[gene|1EA0595C74359A36B9161CFD531CA894C5E66E25|nrdI]-[gene|3B68CE8E9A35997B45E437A316996D585E43B76B|nrdE]-[gene|CD2D14FE9C10544E7C350167EBDBD941B898051D|nrdF]-[gene|8C2A08A8395B72CCC9D03A8154602B8F3B77A1AA|ymaB]
description
[Pubmed|16885274]
regulation
expressed under anaerobic conditions ([protein|search|ResD]) [Pubmed|16885274]
regulatory mechanism
[protein|1E829D639BADDC6BDC9B5FB4C97A632A53FDDB24|resD]: activation, [Pubmed|16885274], in [regulon|protein:1E829D639BADDC6BDC9B5FB4C97A632A53FDDB24|resD regulon]
[protein|FD4E988BB73F6476CCEA4C521F343D6F8CBA457F|nrdR]: repression, (predicted) [Pubmed|15949864], in [regulon|protein:FD4E988BB73F6476CCEA4C521F343D6F8CBA457F|nrdR regulon]
[protein|00BCAAE16576DC5426A652580C69A570FC7A1C2C|perR]: transcription repression, [Pubmed|27920297], in [regulon|protein:00BCAAE16576DC5426A652580C69A570FC7A1C2C|perR regulon]
sigma factors
[protein|360F48D576DE950DF79C1A2677B7A35A8D8CC30C|sigA]: sigma factor, [Pubmed|16885274], in [regulon|protein:360F48D576DE950DF79C1A2677B7A35A8D8CC30C|sigA regulon]
additional information
A [protein|search|ncRNA] is predicted between '[protein|search|ymzA]' and '[protein|search|nrdI]' [PubMed|20525796]
Open in new tab

[gene|1EA0595C74359A36B9161CFD531CA894C5E66E25|nrdI]→[gene|8C2A08A8395B72CCC9D03A8154602B8F3B77A1AA|ymaB]

2024-03-15 17:35:52

ghost

72

9d160ac30c7745496a34c93be2b3a105e0e35c39

32952B230D636C27ED0B2D37BD2B3FCE31A938B1

genes
[gene|93FA602438546FD6201FAB5BD19DB5DEB5965E48|ymzA]-[gene|1EA0595C74359A36B9161CFD531CA894C5E66E25|nrdI]-[gene|3B68CE8E9A35997B45E437A316996D585E43B76B|nrdE]-[gene|CD2D14FE9C10544E7C350167EBDBD941B898051D|nrdF]-[gene|8C2A08A8395B72CCC9D03A8154602B8F3B77A1AA|ymaB]
description
[Pubmed|22383849]
Open in new tab

[gene|93FA602438546FD6201FAB5BD19DB5DEB5965E48|ymzA]→[gene|8C2A08A8395B72CCC9D03A8154602B8F3B77A1AA|ymaB]

2024-03-19 02:59:53

Jstuelk

74

c327eefb1356b60d6946dc8bb1110dce66ded764

3940914A8E31A6E8EACC40EBB2BDE0A966EB921D

Biological materials
Mutant
MGNA-B380 (ymaB::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/1379 NBRP B. subtilis, Japan]
BKE17400 ([gene|8C2A08A8395B72CCC9D03A8154602B8F3B77A1AA|ymaB]::erm  trpC2) available at [http://bgsc.org/getdetail.php?bgscid=BKE17400 BGSC],  [Pubmed|28189581], upstream reverse: _UP1_CATGGGTACTGCGTCCTCCT,  downstream forward: _UP4_TAAAAAAACCCGGTTTCTCG
BKK17400 ([gene|8C2A08A8395B72CCC9D03A8154602B8F3B77A1AA|ymaB]::kan  trpC2) available at [http://bgsc.org/getdetail.php?bgscid=BKK17400 BGSC],  [Pubmed|28189581], upstream reverse: _UP1_CATGGGTACTGCGTCCTCCT,  downstream forward: _UP4_TAAAAAAACCCGGTTTCTCG
References
16885274,8969495,15949864,27920297,31740579

8C2A08A8395B72CCC9D03A8154602B8F3B77A1AA

Page visits: 3562

Time of last update: 2024-03-28 02:21:08

Author of last update: Jstuelk