Difference between revisions of "YlnD"

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Revision as of 13:18, 16 May 2013

  • Description: probable uroporphyrin-III C-methyltransferase

Gene name ylnD
Synonyms
Essential no
Product probable uroporphyrin-III C-methyltransferase
Function siroheme biosynthesis , sulfite reduction
Gene expression levels in SubtiExpress: ylnD
Metabolic function and regulation of this protein in SubtiPathways:
Cys, Met & Sulfate assimilation
MW, pI 28 kDa, 5.752
Gene length, protein length 771 bp, 257 aa
Immediate neighbours cysC, ylnE
Sequences Protein DNA DNA_with_flanks
Genetic context
YlnD context.gif
This image was kindly provided by SubtiList
Expression at a glance   PubMed
YlnD expression.png




























Categories containing this gene/protein

biosynthesis of cofactors

This gene is a member of the following regulons

CymR regulon, S-box

The gene

Basic information

  • Locus tag: BSU15610

Phenotypes of a mutant

Database entries

  • DBTBS entry: [1]
  • SubtiList entry: [2]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Protein family:
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:

Database entries

  • Structure:
  • KEGG entry: [3]
  • E.C. number:

Additional information

Expression and regulation

  • Regulation:
    • repressed by casamino acids PubMed
    • repressed in the presence of cysteine (CymR)
    • induced by methionine starvation (S-box) PubMed
  • Regulatory mechanism:
    • S-box: transcription termination/ antitermination, the S-box riboswitch binds S-adenosylmethionine resulting in termination PubMed
    • CymR: transcription repression
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References