Difference between revisions of "YlmE"

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=Expression and regulation=
 
=Expression and regulation=
  
* '''Operon:''' ''[[ylmD]]-[[ylmE]]-[[sepF]]-[[ylmG]]-[[ylmH]]'' (according to [http://dbtbs.hgc.jp/COG/prom/ylmDEFGH.html DBTBS])
+
* '''Operon:''' ''[[ylmD]]-[[ylmE]]-[[sepF]]-[[ylmG]]-[[ylmH]]'' {{PubMed|16420366}}
  
 
* '''[[Sigma factor]]:'''  
 
* '''[[Sigma factor]]:'''  
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=References=
 
=References=
  
<pubmed>14651647, 20431016 </pubmed>
+
<pubmed>14651647, 20431016 16420366</pubmed>
  
 
[[Category:Protein-coding genes]]
 
[[Category:Protein-coding genes]]

Revision as of 18:55, 23 June 2010

  • Description: amino acid racemase, production of D-amino acids, control of biofilm formation

Gene name ylmE
Synonyms
Essential no
Product amino acid racemase
Function control of biofilm formation
MW, pI 25 kDa, 5.546
Gene length, protein length 690 bp, 230 aa
Immediate neighbours ylmD, sepF
Get the DNA and protein sequences
(Barbe et al., 2009)
Genetic context
YlmE context.gif
This image was kindly provided by SubtiList



The gene

Basic information

  • Locus tag: BSU15380

Phenotypes of a mutant

Database entries

  • DBTBS entry: [1]
  • SubtiList entry: [2]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Protein family: UPF0001 family (according to Swiss-Prot)
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:
  • Interactions:
  • Localization:

Database entries

  • Structure:
  • KEGG entry: [3]
  • E.C. number:

Additional information

Expression and regulation

  • Regulation:
    • repressed under conditions that trigger sporulation (Spo0A) PubMed
  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

Ilana Kolodkin-Gal, Diego Romero, Shugeng Cao, Jon Clardy, Roberto Kolter, Richard Losick
D-amino acids trigger biofilm disassembly.
Science: 2010, 328(5978);627-9
[PubMed:20431016] [WorldCat.org] [DOI] (I p)

Leendert W Hamoen, Jean-Christophe Meile, Wouter de Jong, Philippe Noirot, Jeff Errington
SepF, a novel FtsZ-interacting protein required for a late step in cell division.
Mol Microbiol: 2006, 59(3);989-99
[PubMed:16420366] [WorldCat.org] [DOI] (P p)

Virginie Molle, Masaya Fujita, Shane T Jensen, Patrick Eichenberger, José E González-Pastor, Jun S Liu, Richard Losick
The Spo0A regulon of Bacillus subtilis.
Mol Microbiol: 2003, 50(5);1683-701
[PubMed:14651647] [WorldCat.org] [DOI] (P p)