Difference between revisions of "YlmE"

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|style="background:#ABCDEF;" align="center"|'''Function''' || control of [[biofilm formation]]
 
|style="background:#ABCDEF;" align="center"|'''Function''' || control of [[biofilm formation]]
 
|-
 
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|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://cellpublisher.gobics.de/subtiexpress/ ''Subti''Express]''': [http://cellpublisher.gobics.de/subtiexpress/bsu/BSU15380 ylmE]
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|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU15380 ylmE]
 
|-
 
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|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 25 kDa, 5.546   
 
|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 25 kDa, 5.546   
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|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[ylmD]]'', ''[[sepF]]''
 
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[ylmD]]'', ''[[sepF]]''
 
|-
 
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|colspan="2" style="background:#FAF8CC;" align="center"|'''Get the DNA and protein [http://srs.ebi.ac.uk/srsbin/cgi-bin/wgetz?-e+&#91;EMBLCDS:CAB13412&#93;+-newId sequences] <br/> (Barbe ''et al.'', 2009)'''
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|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU15380 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU15380 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU15380 Advanced_DNA]
 
|-
 
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|colspan="2" | '''Genetic context''' <br/> [[Image:ylmE_context.gif]]
 
|colspan="2" | '''Genetic context''' <br/> [[Image:ylmE_context.gif]]

Revision as of 12:46, 13 May 2013

  • Description: amino acid racemase, production of D-amino acids, control of biofilm formation

Gene name ylmE
Synonyms
Essential no
Product amino acid racemase
Function control of biofilm formation
Gene expression levels in SubtiExpress: ylmE
MW, pI 25 kDa, 5.546
Gene length, protein length 690 bp, 230 aa
Immediate neighbours ylmD, sepF
Sequences Protein DNA Advanced_DNA
Genetic context
YlmE context.gif
This image was kindly provided by SubtiList
Expression at a glance   PubMed
YlmE expression.png
























Categories containing this gene/protein

biofilm formation

This gene is a member of the following regulons

Spo0A regulon

The gene

Basic information

  • Locus tag: BSU15380

Phenotypes of a mutant

Database entries

  • DBTBS entry: [1]
  • SubtiList entry: [2]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Protein family: UPF0001 family (according to Swiss-Prot)
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:

Database entries

  • Structure:
  • KEGG entry: [3]
  • E.C. number:

Additional information

Expression and regulation

  • Sigma factor:
  • Regulation:
    • repressed under conditions that trigger sporulation (Spo0A) PubMed
  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

Ilana Kolodkin-Gal, Diego Romero, Shugeng Cao, Jon Clardy, Roberto Kolter, Richard Losick
D-amino acids trigger biofilm disassembly.
Science: 2010, 328(5978);627-9
[PubMed:20431016] [WorldCat.org] [DOI] (I p)

Leendert W Hamoen, Jean-Christophe Meile, Wouter de Jong, Philippe Noirot, Jeff Errington
SepF, a novel FtsZ-interacting protein required for a late step in cell division.
Mol Microbiol: 2006, 59(3);989-99
[PubMed:16420366] [WorldCat.org] [DOI] (P p)

Virginie Molle, Masaya Fujita, Shane T Jensen, Patrick Eichenberger, José E González-Pastor, Jun S Liu, Richard Losick
The Spo0A regulon of Bacillus subtilis.
Mol Microbiol: 2003, 50(5);1683-701
[PubMed:14651647] [WorldCat.org] [DOI] (P p)