Difference between revisions of "YlaC"

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|style="background:#ABCDEF;" align="center"|'''Function''' || [[transcription]]
 
|style="background:#ABCDEF;" align="center"|'''Function''' || [[transcription]]
 
|-
 
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|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://cellpublisher.gobics.de/subtiexpress/ ''Subti''Express]''': [http://cellpublisher.gobics.de/subtiexpress/bsu/BSU14730 ylaC]
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|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU14730 ylaC]
 
|-
 
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|colspan="2" style="background:#FAF8CC;" align="center"| '''Interactions involving this protein in [http://cellpublisher.gobics.de/subtinteract/startpage/start/ ''Subt''Interact]''': [http://cellpublisher.gobics.de/subtinteract/interactionList/2/YlaC YlaC]
 
|colspan="2" style="background:#FAF8CC;" align="center"| '''Interactions involving this protein in [http://cellpublisher.gobics.de/subtinteract/startpage/start/ ''Subt''Interact]''': [http://cellpublisher.gobics.de/subtinteract/interactionList/2/YlaC YlaC]
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|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[ylaB]]'', ''[[ylaD]]''
 
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[ylaB]]'', ''[[ylaD]]''
 
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|colspan="2" style="background:#FAF8CC;" align="center"|'''Get the DNA and protein [http://srs.ebi.ac.uk/srsbin/cgi-bin/wgetz?-e+&#91;EMBLCDS:CAB13346&#93;+-newId sequences] <br/> (Barbe ''et al.'', 2009)'''
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|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU14730 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU14730 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU14730 Advanced_DNA]
 
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|colspan="2" | '''Genetic context''' <br/> [[Image:ylaC_context.gif]]
 
|colspan="2" | '''Genetic context''' <br/> [[Image:ylaC_context.gif]]

Revision as of 12:44, 13 May 2013

Gene name ylaC
Synonyms
Essential no
Product RNA polymerase sigma factor YlaC
Function transcription
Gene expression levels in SubtiExpress: ylaC
Interactions involving this protein in SubtInteract: YlaC
MW, pI 20 kDa, 9.282
Gene length, protein length 519 bp, 173 aa
Immediate neighbours ylaB, ylaD
Sequences Protein DNA Advanced_DNA
Genetic context
YlaC context.gif
This image was kindly provided by SubtiList
Expression at a glance   PubMed
YlaC expression.png















Categories containing this gene/protein

transcription, sigma factors and their control

This gene is a member of the following regulons

Spx regulon, YlaC regulon

The YlaC regulon: ylaA-ylaB-ylaC-ylaD

The gene

Basic information

  • Locus tag: BSU14730

Phenotypes of a mutant

Database entries

  • DBTBS entry: [1]
  • SubtiList entry: [2]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Protein family: ECF subfamily (according to Swiss-Prot)
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity: YlaD acts as anti-sigma PubMed

Database entries

  • Structure:
  • KEGG entry: [3]
  • E.C. number:

Additional information

Expression and regulation

  • Regulation:
  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

Additional publications: PubMed

Thorsten Mascher, Anna-Barbara Hachmann, John D Helmann
Regulatory overlap and functional redundancy among Bacillus subtilis extracytoplasmic function sigma factors.
J Bacteriol: 2007, 189(19);6919-27
[PubMed:17675383] [WorldCat.org] [DOI] (P p)

Han-Bong Ryu, Inji Shin, Hyung-Soon Yim, Sa-Ouk Kang
YlaC is an extracytoplasmic function (ECF) sigma factor contributing to hydrogen peroxide resistance in Bacillus subtilis.
J Microbiol: 2006, 44(2);206-16
[PubMed:16728958] [WorldCat.org] (P p)

Takashi Matsumoto, Kaoru Nakanishi, Kei Asai, Yoshito Sadaie
Transcriptional analysis of the ylaABCD operon of Bacillus subtilis encoding a sigma factor of extracytoplasmic function family.
Genes Genet Syst: 2005, 80(6);385-93
[PubMed:16501307] [WorldCat.org] [DOI] (P p)