Difference between revisions of "YknW"

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|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[yknV]]'', ''[[yknX]]''
 
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[yknV]]'', ''[[yknX]]''
 
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|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU14340 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU14340 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU14340 Advanced_DNA]
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|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU14340 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU14340 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU14340 DNA_with_flanks]
 
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|colspan="2" | '''Genetic context''' <br/> [[Image:yknW_context.gif]]
 
|colspan="2" | '''Genetic context''' <br/> [[Image:yknW_context.gif]]

Revision as of 10:05, 14 May 2013

Gene name yknW
Synonyms
Essential no
Product modulator of ABC transporter assembly
Function resistence against SdpC toxin
Gene expression levels in SubtiExpress: yknW
Interactions involving this protein in SubtInteract: YknW
MW, pI 24 kDa, 6.94
Gene length, protein length 693 bp, 231 aa
Immediate neighbours yknV, yknX
Sequences Protein DNA DNA_with_flanks
Genetic context
YknW context.gif
This image was kindly provided by SubtiList
Expression at a glance   PubMed
YknW expression.png
























Categories containing this gene/protein

ABC transporters, cell envelope stress proteins (controlled by SigM, V, W, X, Y), resistance against toxins/ antibiotics, membrane proteins

This gene is a member of the following regulons

AbrB regulon, SigW regulon

The gene

Basic information

  • Locus tag: BSU14340

Phenotypes of a mutant

Database entries

  • DBTBS entry: [1]
  • SubtiList entry: [2]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Protein family:
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:

Database entries

  • Structure:
  • KEGG entry: [3]
  • E.C. number:

Additional information

Expression and regulation

  • Regulation:
  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

Additional publications: PubMed

Hannes Hahne, Susanne Wolff, Michael Hecker, Dörte Becher
From complementarity to comprehensiveness--targeting the membrane proteome of growing Bacillus subtilis by divergent approaches.
Proteomics: 2008, 8(19);4123-36
[PubMed:18763711] [WorldCat.org] [DOI] (I p)

Bronwyn G Butcher, John D Helmann
Identification of Bacillus subtilis sigma-dependent genes that provide intrinsic resistance to antimicrobial compounds produced by Bacilli.
Mol Microbiol: 2006, 60(3);765-82
[PubMed:16629676] [WorldCat.org] [DOI] (P p)

Qiang Qian, Chien Y Lee, John D Helmann, Mark A Strauch
AbrB is a regulator of the sigma(W) regulon in Bacillus subtilis.
FEMS Microbiol Lett: 2002, 211(2);219-23
[PubMed:12076816] [WorldCat.org] [DOI] (P p)

X Huang, A Gaballa, M Cao, J D Helmann
Identification of target promoters for the Bacillus subtilis extracytoplasmic function sigma factor, sigma W.
Mol Microbiol: 1999, 31(1);361-71
[PubMed:9987136] [WorldCat.org] [DOI] (P p)