Difference between revisions of "YkkD"

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|style="background:#ABCDEF;" align="center"|'''Function''' || unknown
 
|style="background:#ABCDEF;" align="center"|'''Function''' || unknown
 
|-
 
|-
|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://cellpublisher.gobics.de/subtiexpress/ ''Subti''Express]''': [http://cellpublisher.gobics.de/subtiexpress/bsu/BSU13100 ykkD]
+
|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU13100 ykkD]
 
|-
 
|-
 
|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 11 kDa, 8.616   
 
|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 11 kDa, 8.616   
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|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[ykkC]]'', ''[[ykkE]]''
 
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[ykkC]]'', ''[[ykkE]]''
 
|-
 
|-
|colspan="2" style="background:#FAF8CC;" align="center"|'''Get the DNA and protein [http://srs.ebi.ac.uk/srsbin/cgi-bin/wgetz?-e+&#91;EMBLCDS:CAB13167&#93;+-newId sequences] <br/> (Barbe ''et al.'', 2009)'''
+
|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU13100 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU13100 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU13100 Advanced_DNA]
 
|-
 
|-
 
|colspan="2" | '''Genetic context''' <br/> [[Image:ykkD_context.gif]]
 
|colspan="2" | '''Genetic context''' <br/> [[Image:ykkD_context.gif]]

Revision as of 12:38, 13 May 2013

  • Description: similar to molecular chaperone

Gene name ykkD
Synonyms
Essential no
Product unknown
Function unknown
Gene expression levels in SubtiExpress: ykkD
MW, pI 11 kDa, 8.616
Gene length, protein length 315 bp, 105 aa
Immediate neighbours ykkC, ykkE
Sequences Protein DNA Advanced_DNA
Genetic context
YkkD context.gif
This image was kindly provided by SubtiList
Expression at a glance   PubMed
YkkD expression.png















Categories containing this gene/protein

chaperones/ protein folding, membrane proteins

This gene is a member of the following regulons

The gene

Basic information

  • Locus tag: BSU13100

Phenotypes of a mutant

Database entries

  • DBTBS entry: no entry
  • SubtiList entry: [1]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Protein family: View classification (according to Swiss-Prot)
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:

Database entries

  • Structure:
  • KEGG entry: [2]
  • E.C. number:

Additional information

Expression and regulation

  • Sigma factor:
  • Regulation:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

Michelle M Meyer, Ming C Hammond, Yasmmyn Salinas, Adam Roth, Narasimhan Sudarsan, Ronald R Breaker
Challenges of ligand identification for riboswitch candidates.
RNA Biol: 2011, 8(1);5-10
[PubMed:21317561] [WorldCat.org] [DOI] (I p)

D L Jack, M L Storms, J H Tchieu, I T Paulsen, M H Saier
A broad-specificity multidrug efflux pump requiring a pair of homologous SMR-type proteins.
J Bacteriol: 2000, 182(8);2311-3
[PubMed:10735877] [WorldCat.org] [DOI] (P p)