Difference between revisions of "YkkD"

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(Categories containing this gene/protein)
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* '''Regulatory mechanism:'''  
 
* '''Regulatory mechanism:'''  
 +
** expression of the  ''[[ykkC]]-[[ykkD]]'' operon may be controlled by the presumptive ''[[ykkC]]''/''[[yxkD]]'' [[riboswitch]] {{PubMed|15096624}}
  
 
* '''Additional information:'''  
 
* '''Additional information:'''  
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=References=
 
=References=
<pubmed> 10735877</pubmed>
+
<pubmed> 10735877 21317561 </pubmed>
 
[[Category:Protein-coding genes]]
 
[[Category:Protein-coding genes]]

Revision as of 07:29, 25 May 2011

  • Description: similar to molecular chaperone

Gene name ykkD
Synonyms
Essential no
Product unknown
Function unknown
MW, pI 11 kDa, 8.616
Gene length, protein length 315 bp, 105 aa
Immediate neighbours ykkC, ykkE
Get the DNA and protein sequences
(Barbe et al., 2009)
Genetic context
YkkD context.gif
This image was kindly provided by SubtiList



Categories containing this gene/protein

chaperones/ protein folding, membrane proteins

This gene is a member of the following regulons

The gene

Basic information

  • Locus tag: BSU13100

Phenotypes of a mutant

Database entries

  • DBTBS entry: no entry
  • SubtiList entry: [1]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Protein family: View classification (according to Swiss-Prot)
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:
  • Interactions:
  • Localization: cell membrane (according to Swiss-Prot)

Database entries

  • Structure:
  • KEGG entry: [2]
  • E.C. number:

Additional information

Expression and regulation

  • Regulation:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

Michelle M Meyer, Ming C Hammond, Yasmmyn Salinas, Adam Roth, Narasimhan Sudarsan, Ronald R Breaker
Challenges of ligand identification for riboswitch candidates.
RNA Biol: 2011, 8(1);5-10
[PubMed:21317561] [WorldCat.org] [DOI] (I p)

D L Jack, M L Storms, J H Tchieu, I T Paulsen, M H Saier
A broad-specificity multidrug efflux pump requiring a pair of homologous SMR-type proteins.
J Bacteriol: 2000, 182(8);2311-3
[PubMed:10735877] [WorldCat.org] [DOI] (P p)