yjmB

yjmB
168

similar to Na+:galactoside symporter

locus
BSU_12310
Molecular weight
50.26 kDa
pI
9.83
Protein length
Gene length
function
unknown
product
unknown
essential
no
synonyms
yjmB

Genomic Context

Categories containing this gene/protein

List of homologs in different organisms, belongs to COG2211 (Galperin et al., 2021)

This gene is a member of the following regulons

Gene
Coordinates
1,301,939  1,303,318
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The protein
Protein family
[wiki|sodium:galactoside symporter (TC 2.A.2) family] (according to UniProt)
Structure
[PDB|4M64] (melibiose permease from Salmonella typhimurium, 31% identity) [pubmed|24389923]
[AF|O34961]
Paralogous protein(s)
[protein|B13F7C35FBD55C674E5B19836D32279E7C1A5520|gutP], [protein|F92925E2FDCFE6DDA3E87C7B541FE6A6CE5AABB8|xynP]
[wiki|Localization]
cell membrane (according to UniProt)
Expression and Regulation
Operons
genes
[gene|5A0C29C7E218701727523885D01A48D02266B421|uxaC]-[gene|59CD3E4C24326542D9C85BB6FE64FBF49869EB55|yjmB]-[gene|3AEA5D769B89E676C916FD8934D762B4C9A02AA2|yjmC]-[gene|CC55984E31C5698668CCCD4AC6E2210B2B41ACAB|yjmD]-[gene|A0A6D36BEC397345A1D17E6A7C34E1F612FD46C7|uxuA]-[gene|B886E504A767343042DE9BF4E23E6798D124A2CF|yjmF]-[gene|6D08E897DD697523FD0720704A25AD4472075B6C|exuT]-[gene|69B143987DCF73B5D080E3FD87A6CA2940E07DA8|exuR]-[gene|A1C64447E0074B06C9210CC51680273FAAE703FA|uxaB]-[gene|ED29D2DE48AADEA09C90F08B6021555C357946B4|uxaA]
description
[Pubmed|9882655]
regulation
induced by galacturonate ([protein|search|ExuR]) [Pubmed|9882655]
regulatory mechanism
[protein|69B143987DCF73B5D080E3FD87A6CA2940E07DA8|exuR]: repression, in the absence of inducer, in [regulon|protein:69B143987DCF73B5D080E3FD87A6CA2940E07DA8|exuR regulon]
[protein|E39AFEB7B7F28969A35C4B51CC6E7819F71C79D9|ccpA]: repression, [pubmed|9882655] [pubmed|10666464], in [regulon|protein:E39AFEB7B7F28969A35C4B51CC6E7819F71C79D9|ccpA regulon]
sigma factors
[protein|360F48D576DE950DF79C1A2677B7A35A8D8CC30C|sigA]: sigma factor, [Pubmed|9882655], in [regulon|protein:360F48D576DE950DF79C1A2677B7A35A8D8CC30C|sigA regulon]
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[gene|5A0C29C7E218701727523885D01A48D02266B421|uxaC]→[gene|ED29D2DE48AADEA09C90F08B6021555C357946B4|uxaA]

2024-03-03 22:17:45

ghost

50

0325999ea185bfaaf2dea87e1701479c52256033

A15F6E93B04DC8C4B59B7976DAC34CE9AC0B8E51

Biological materials
Mutant
MGNA-A366 (yjmB::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/366 NBRP B. subtilis, Japan]
BKE12310 ([gene|59CD3E4C24326542D9C85BB6FE64FBF49869EB55|yjmB]::erm  trpC2) available at [http://bgsc.org/getdetail.php?bgscid=BKE12310 BGSC],  [Pubmed|28189581], upstream reverse: _UP1_CATGTTCCACCTCTGTGTCT,  downstream forward: _UP4_TGACAATATAATATAAAGAA
BKK12310 ([gene|59CD3E4C24326542D9C85BB6FE64FBF49869EB55|yjmB]::kan  trpC2) available at [http://bgsc.org/getdetail.php?bgscid=BKK12310 BGSC],  [Pubmed|28189581], upstream reverse: _UP1_CATGTTCCACCTCTGTGTCT,  downstream forward: _UP4_TGACAATATAATATAAAGAA
References
9579062,9882655,10666464,24389923

59CD3E4C24326542D9C85BB6FE64FBF49869EB55

Page visits: 2889

Time of last update: 2024-03-28 18:04:33

Author of last update: Melvin.boenninger