YjdF

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  • Description: unknown

Gene name yjdF
Synonyms
Essential no
Product unknown
Function unknown
Gene expression levels in SubtiExpress: yjdF
Metabolic function and regulation of this protein in SubtiPathways:
Sugar catabolism
MW, pI 18 kDa, 10.557
Gene length, protein length 480 bp, 160 aa
Immediate neighbours manA, yjdG
Sequences Protein DNA DNA_with_flanks
Genetic context
YjdF context.gif
This image was kindly provided by SubtiList
Expression at a glance   PubMed
YjdF expression.png




























Categories containing this gene/protein

proteins of unknown function

This gene is a member of the following regulons

ManR regulon

The gene

Basic information

  • Locus tag: BSU12030

Phenotypes of a mutant

Database entries

  • DBTBS entry: no entry
  • SubtiList entry: [1]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Protein family:
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:

Database entries

  • Structure:
  • KEGG entry: [2]
  • E.C. number:

Additional information

Expression and regulation

  • Regulatory mechanism:
    • ManR: transcription activation in the presence of mannose and absence of glucose PubMed
    • expession may be controlled by a potential RNA switch located in the 5' untranslated region of the manP-manA-yjdF mRNA between manA and yjdF PubMed
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

Zasha Weinberg, Joy X Wang, Jarrod Bogue, Jingying Yang, Keith Corbino, Ryan H Moy, Ronald R Breaker
Comparative genomics reveals 104 candidate structured RNAs from bacteria, archaea, and their metagenomes.
Genome Biol: 2010, 11(3);R31
[PubMed:20230605] [WorldCat.org] [DOI] (I p)

Tianqi Sun, Josef Altenbuchner
Characterization of a mannose utilization system in Bacillus subtilis.
J Bacteriol: 2010, 192(8);2128-39
[PubMed:20139185] [WorldCat.org] [DOI] (I p)