Difference between revisions of "YjdF"

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= [[Categories]] containing this gene/protein =
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{{SubtiWiki category|[[proteins of unknown function]]}}
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= This gene is a member of the following [[regulons]] =
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{{SubtiWiki regulon|[[ManR regulon]]}}
  
 
=The gene=
 
=The gene=
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= Categories containing this gene/protein =
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{{SubtiWiki category|[[proteins of unknown function]]}}
 
 
=The protein=
 
=The protein=
  

Revision as of 18:38, 8 December 2010

  • Description: unknown

Gene name yjdF
Synonyms
Essential no
Product unknown
Function unknown
Metabolic function and regulation of this protein in SubtiPathways:
Sugar catabolism
MW, pI 18 kDa, 10.557
Gene length, protein length 480 bp, 160 aa
Immediate neighbours manA, yjdG
Get the DNA and protein sequences
(Barbe et al., 2009)
Genetic context
YjdF context.gif
This image was kindly provided by SubtiList







Categories containing this gene/protein

proteins of unknown function

This gene is a member of the following regulons

ManR regulon

The gene

Basic information

  • Locus tag: BSU12030

Phenotypes of a mutant

Database entries

  • DBTBS entry: no entry
  • SubtiList entry: [1]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Protein family:
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:
  • Interactions:
  • Localization:

Database entries

  • Structure:
  • KEGG entry: [2]
  • E.C. number:

Additional information

Expression and regulation

  • Regulatory mechanism:
    • ManR: transcription activation in the presence of mannose and absence of glucose PubMed
    • expession may be controlled by a potential RNA switch located in the 5' untranslated region of the manP-manA-yjdF mRNA between manA and yjdF PubMed
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

Zasha Weinberg, Joy X Wang, Jarrod Bogue, Jingying Yang, Keith Corbino, Ryan H Moy, Ronald R Breaker
Comparative genomics reveals 104 candidate structured RNAs from bacteria, archaea, and their metagenomes.
Genome Biol: 2010, 11(3);R31
[PubMed:20230605] [WorldCat.org] [DOI] (I p)

Tianqi Sun, Josef Altenbuchner
Characterization of a mannose utilization system in Bacillus subtilis.
J Bacteriol: 2010, 192(8);2128-39
[PubMed:20139185] [WorldCat.org] [DOI] (I p)