Difference between revisions of "YjcG"

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* '''Additional information:'''
 
* '''Additional information:'''
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** number of protein molecules per cell (minimal medium with glucose and ammonium): 2549 {{PubMed|24696501}}
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** number of protein molecules per cell (complex medium with amino acids, without glucose): 1704 {{PubMed|24696501}}
  
 
=Biological materials =
 
=Biological materials =

Revision as of 09:25, 17 April 2014

  • Description: putative 2'-5' RNA-ligase

Gene name yjcG
Synonyms
Essential no
Product putative 2'-5' RNA-ligase
Function RNA metabolism
Gene expression levels in SubtiExpress: yjcG
MW, pI 19 kDa, 5.572
Gene length, protein length 513 bp, 171 aa
Immediate neighbours yjcF, yjcH
Sequences Protein DNA DNA_with_flanks
Genetic context
YjcG context.gif
This image was kindly provided by SubtiList
Expression at a glance   PubMed
YjcG expression.png















Categories containing this gene/protein

poorly characterized/ putative enzymes

This gene is a member of the following regulons

The gene

Basic information

  • Locus tag: BSU11850

Phenotypes of a mutant

Database entries

  • DBTBS entry: no entry
  • SubtiList entry: [1]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Protein family: UPF0477 family (according to Swiss-Prot)
  • Paralogous protein(s): YtlP

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:

Database entries

  • KEGG entry: [2]
  • E.C. number:

Additional information

Expression and regulation

  • Operon:
  • Regulation: repressed by casamino acids PubMed
  • Regulatory mechanism:
  • Additional information:
    • number of protein molecules per cell (minimal medium with glucose and ammonium): 2549 PubMed
    • number of protein molecules per cell (complex medium with amino acids, without glucose): 1704 PubMed

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

Dan Li, Cong Liu, Yu-He Liang, Lan-Fen Li, Xiao-Dong Su
Crystal structure of B. subtilis YjcG characterizing the YjcG-like group of 2H phosphoesterase superfamily.
Proteins: 2008, 72(3);1071-6
[PubMed:18473364] [WorldCat.org] [DOI] (I p)

Dan Li, Chiomui Chan, Yu He Liang, Xiaofeng Zheng, Lanfen Li, Xiao Dong Su
Preparation, crystallization and preliminary X-ray analysis of YjcG protein from Bacillus subtilis.
Acta Crystallogr Sect F Struct Biol Cryst Commun: 2005, 61(Pt 5);496-8
[PubMed:16511078] [WorldCat.org] [DOI] (I p)

Ulrike Mäder, Georg Homuth, Christian Scharf, Knut Büttner, Rüdiger Bode, Michael Hecker
Transcriptome and proteome analysis of Bacillus subtilis gene expression modulated by amino acid availability.
J Bacteriol: 2002, 184(15);4288-95
[PubMed:12107147] [WorldCat.org] [DOI] (P p)