Difference between revisions of "YjcG"

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|colspan="2" |'''[http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=yjcG_1256862_1257377_-1 Expression at a glance]'''&#160;&#160;&#160;{{PubMed|22383849}}<br/>[[Image:yjcG_expression.png|500px|link=http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU11850]]
 
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Revision as of 13:00, 16 May 2013

  • Description: putative 2'-5' RNA-ligase

Gene name yjcG
Synonyms
Essential no
Product putative 2'-5' RNA-ligase
Function RNA metabolism
Gene expression levels in SubtiExpress: yjcG
MW, pI 19 kDa, 5.572
Gene length, protein length 513 bp, 171 aa
Immediate neighbours yjcF, yjcH
Sequences Protein DNA DNA_with_flanks
Genetic context
YjcG context.gif
This image was kindly provided by SubtiList
Expression at a glance   PubMed
YjcG expression.png
























Categories containing this gene/protein

poorly characterized/ putative enzymes

This gene is a member of the following regulons

The gene

Basic information

  • Locus tag: BSU11850

Phenotypes of a mutant

Database entries

  • DBTBS entry: no entry
  • SubtiList entry: [1]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Protein family: UPF0477 family (according to Swiss-Prot)
  • Paralogous protein(s): YtlP

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:

Database entries

  • KEGG entry: [2]
  • E.C. number:

Additional information

Expression and regulation

  • Operon:
  • Sigma factor:
  • Regulation: repressed by casamino acids PubMed
  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

Dan Li, Cong Liu, Yu-He Liang, Lan-Fen Li, Xiao-Dong Su
Crystal structure of B. subtilis YjcG characterizing the YjcG-like group of 2H phosphoesterase superfamily.
Proteins: 2008, 72(3);1071-6
[PubMed:18473364] [WorldCat.org] [DOI] (I p)

Ulrike Mäder, Georg Homuth, Christian Scharf, Knut Büttner, Rüdiger Bode, Michael Hecker
Transcriptome and proteome analysis of Bacillus subtilis gene expression modulated by amino acid availability.
J Bacteriol: 2002, 184(15);4288-95
[PubMed:12107147] [WorldCat.org] [DOI] (P p)