Difference between revisions of "YjcG"

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* '''Description:''' putative 2'-5' RNA-ligase <br/><br/>
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|style="background:#ABCDEF;" align="center"|'''Function''' || RNA metabolism
 
|style="background:#ABCDEF;" align="center"|'''Function''' || RNA metabolism
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|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://cellpublisher.gobics.de/subtiexpress/ ''Subti''Express]''': [http://cellpublisher.gobics.de/subtiexpress/bsu/BSU11850 yjcG]
 
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|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 19 kDa, 5.572   
 
|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 19 kDa, 5.572   

Revision as of 16:51, 6 August 2012


Gene name yjcG
Synonyms
Essential no
Product putative 2'-5' RNA-ligase
Function RNA metabolism
Gene expression levels in SubtiExpress: yjcG
MW, pI 19 kDa, 5.572
Gene length, protein length 513 bp, 171 aa
Immediate neighbours yjcF, yjcH
Get the DNA and protein sequences
(Barbe et al., 2009)
Genetic context
YjcG context.gif
This image was kindly provided by SubtiList
Expression at a glance   PubMed
YjcG expression.png
























Categories containing this gene/protein

poorly characterized/ putative enzymes

This gene is a member of the following regulons

The gene

Basic information

  • Locus tag: BSU11850

Phenotypes of a mutant

Database entries

  • DBTBS entry: no entry
  • SubtiList entry: [1]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Protein family: UPF0477 family (according to Swiss-Prot)
  • Paralogous protein(s): YtlP

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:
  • Interactions:
  • Localization:

Database entries

  • KEGG entry: [2]
  • E.C. number:

Additional information

Expression and regulation

  • Operon:
  • Sigma factor:
  • Regulation: repressed by casamino acids PubMed
  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

Dan Li, Cong Liu, Yu-He Liang, Lan-Fen Li, Xiao-Dong Su
Crystal structure of B. subtilis YjcG characterizing the YjcG-like group of 2H phosphoesterase superfamily.
Proteins: 2008, 72(3);1071-6
[PubMed:18473364] [WorldCat.org] [DOI] (I p)

Ulrike Mäder, Georg Homuth, Christian Scharf, Knut Büttner, Rüdiger Bode, Michael Hecker
Transcriptome and proteome analysis of Bacillus subtilis gene expression modulated by amino acid availability.
J Bacteriol: 2002, 184(15);4288-95
[PubMed:12107147] [WorldCat.org] [DOI] (P p)