Difference between revisions of "YjbO"

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|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[nadF]]'', ''[[prpE]]''
 
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[nadF]]'', ''[[prpE]]''
 
|-
 
|-
|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU11620 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU11620 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU11620 Advanced_DNA]
+
|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU11620 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU11620 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU11620 DNA_with_flanks]
 
|-
 
|-
 
|colspan="2" | '''Genetic context''' <br/> [[Image:yjbO_context.gif]]
 
|colspan="2" | '''Genetic context''' <br/> [[Image:yjbO_context.gif]]

Revision as of 09:55, 14 May 2013

  • Description: unknown

Gene name yjbO
Synonyms
Essential no
Product unknown
Function unknown
Gene expression levels in SubtiExpress: yjbO
MW, pI 31 kDa, 6.551
Gene length, protein length 849 bp, 283 aa
Immediate neighbours nadF, prpE
Sequences Protein DNA DNA_with_flanks
Genetic context
YjbO context.gif
This image was kindly provided by SubtiList
Expression at a glance   PubMed
YjbO expression.png
























Categories containing this gene/protein

translation

This gene is a member of the following regulons

The gene

Basic information

  • Locus tag: BSU11620

Phenotypes of a mutant

Database entries

  • DBTBS entry: no entry
  • SubtiList entry: [1]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity: RNA uridine = RNA pseudouridine (according to Swiss-Prot)
  • Protein family: pseudouridine synthase rluA family (according to Swiss-Prot)
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:

Database entries

  • Structure:
  • KEGG entry: [2]
  • E.C. number:

Additional information

Expression and regulation

  • Sigma factor:
  • Regulation: expressed during exponential growth
  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

Hideaki Nanamiya, Koji Kasai, Akira Nozawa, Choong-Soo Yun, Takakuni Narisawa, Kana Murakami, Yousuke Natori, Fujio Kawamura, Yuzuru Tozawa
Identification and functional analysis of novel (p)ppGpp synthetase genes in Bacillus subtilis.
Mol Microbiol: 2008, 67(2);291-304
[PubMed:18067544] [WorldCat.org] [DOI] (P p)