Difference between revisions of "YjbK"

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(Extended information on the protein)
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|style="background:#ABCDEF;" align="center"|'''Function''' || unknown
 
|style="background:#ABCDEF;" align="center"|'''Function''' || unknown
 
|-
 
|-
|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://cellpublisher.gobics.de/subtiexpress/ ''Subti''Express]''': [http://cellpublisher.gobics.de/subtiexpress/bsu/BSU11580 yjbK]
+
|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU11580 yjbK]
 
|-
 
|-
 
|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 22 kDa, 5.88   
 
|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 22 kDa, 5.88   
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|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[cwlQ]]'', ''[[yjbL]]''
 
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[cwlQ]]'', ''[[yjbL]]''
 
|-
 
|-
|colspan="2" style="background:#FAF8CC;" align="center"|'''Get the DNA and protein [http://srs.ebi.ac.uk/srsbin/cgi-bin/wgetz?-e+&#91;EMBLCDS:CAB13015&#93;+-newId sequences] <br/> (Barbe ''et al.'', 2009)'''
+
|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU11580 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU11580 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU11580 Advanced_DNA]
 
|-
 
|-
 
|colspan="2" | '''Genetic context''' <br/> [[Image:yjbK_context.gif]]
 
|colspan="2" | '''Genetic context''' <br/> [[Image:yjbK_context.gif]]

Revision as of 12:33, 13 May 2013

  • Description: unknown

Gene name yjbK
Synonyms
Essential no
Product unknown
Function unknown
Gene expression levels in SubtiExpress: yjbK
MW, pI 22 kDa, 5.88
Gene length, protein length 570 bp, 190 aa
Immediate neighbours cwlQ, yjbL
Sequences Protein DNA Advanced_DNA
Genetic context
YjbK context.gif
This image was kindly provided by SubtiList
Expression at a glance   PubMed
YjbK expression.png
























Categories containing this gene/protein

proteins of unknown function

This gene is a member of the following regulons

The gene

Basic information

  • Locus tag: BSU11580

Phenotypes of a mutant

Database entries

  • DBTBS entry: no entry
  • SubtiList entry: [1]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Protein family:
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification: phosphorylated on Ser-2 PubMed
  • Cofactor(s):
  • Effectors of protein activity:

Database entries

  • Structure:
  • KEGG entry: [2]
  • E.C. number:

Additional information

Expression and regulation

  • Operon:
  • Sigma factor:
  • Regulation:
  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

Boumediene Soufi, Chanchal Kumar, Florian Gnad, Matthias Mann, Ivan Mijakovic, Boris Macek
Stable isotope labeling by amino acids in cell culture (SILAC) applied to quantitative proteomics of Bacillus subtilis.
J Proteome Res: 2010, 9(7);3638-46
[PubMed:20509597] [WorldCat.org] [DOI] (I p)

Xue-Yu Dai, Yuan Liu, Yu-He Liang, Xiaofeng Zheng, Ming Luo, Lanfen Li, Xiao-Dong Su
Protein expression, crystallization and preliminary X-ray crystallographic studies of YjbK from Bacillus subtilis.
Protein Pept Lett: 2005, 12(7);663-4
[PubMed:16522181] [WorldCat.org] [DOI] (P p)