Difference between revisions of "YhdL"

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(Biological materials)
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* '''Mutant:'''
 
* '''Mutant:'''
 +
** BP97 (D(''[[sigM]]-[[yhdL]]-[[yhdK]]'')::''aphA3''), available in [[Fabian Commichau]]'s lab
  
 
* '''Expression vector:'''
 
* '''Expression vector:'''

Revision as of 13:24, 23 October 2013

  • Description: anti-SigM protein

Gene name yhdL
Synonyms
Essential yes PubMed
Product anti-SigM protein
Function control of SigM activity
Gene expression levels in SubtiExpress: yhdL
Interactions involving this protein in SubtInteract: YhdL
MW, pI 40 kDa, 6.182
Gene length, protein length 1074 bp, 358 aa
Immediate neighbours yhdK, sigM
Sequences Protein DNA DNA_with_flanks
Genetic context
YhdL context.gif
This image was kindly provided by SubtiList
Expression at a glance   PubMed
YhdL expression.png
























Categories containing this gene/protein

sigma factors and their control, cell envelope stress proteins (controlled by SigM, V, W, X, Y), essential genes, membrane proteins

This gene is a member of the following regulons

SigM regulon

The gene

Basic information

  • Locus tag: BSU09510

Phenotypes of a mutant

essential PubMed

Database entries

  • DBTBS entry: [1]
  • SubtiList entry: [2]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Protein family:
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:

Database entries

  • Structure:
  • KEGG entry: [3]
  • E.C. number:

Additional information

Expression and regulation

  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

Warawan Eiamphungporn, John D Helmann
The Bacillus subtilis sigma(M) regulon and its contribution to cell envelope stress responses.
Mol Microbiol: 2008, 67(4);830-48
[PubMed:18179421] [WorldCat.org] [DOI] (P p)

Mika Yoshimura, Kei Asai, Yoshito Sadaie, Hirofumi Yoshikawa
Interaction of Bacillus subtilis extracytoplasmic function (ECF) sigma factors with the N-terminal regions of their potential anti-sigma factors.
Microbiology (Reading): 2004, 150(Pt 3);591-599
[PubMed:14993308] [WorldCat.org] [DOI] (P p)

M J Horsburgh, A Moir
Sigma M, an ECF RNA polymerase sigma factor of Bacillus subtilis 168, is essential for growth and survival in high concentrations of salt.
Mol Microbiol: 1999, 32(1);41-50
[PubMed:10216858] [WorldCat.org] [DOI] (P p)