Difference between revisions of "YhdK"
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|style="background:#ABCDEF;" align="center"|'''Function''' || control of [[SigM]] activity | |style="background:#ABCDEF;" align="center"|'''Function''' || control of [[SigM]] activity | ||
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| − | |colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http:// | + | |colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU09500 yhdK] |
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|colspan="2" style="background:#FAF8CC;" align="center"| '''Interactions involving this protein in [http://cellpublisher.gobics.de/subtinteract/startpage/start/ ''Subt''Interact]''': [http://cellpublisher.gobics.de/subtinteract/interactionList/2/YhdK YhdK] | |colspan="2" style="background:#FAF8CC;" align="center"| '''Interactions involving this protein in [http://cellpublisher.gobics.de/subtinteract/startpage/start/ ''Subt''Interact]''': [http://cellpublisher.gobics.de/subtinteract/interactionList/2/YhdK YhdK] | ||
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|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[yhdJ]]'', ''[[yhdL]]'' | |style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[yhdJ]]'', ''[[yhdL]]'' | ||
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| − | | | + | |style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU09500 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU09500 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU09500 Advanced_DNA] |
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|colspan="2" | '''Genetic context''' <br/> [[Image:yhdK_context.gif]] | |colspan="2" | '''Genetic context''' <br/> [[Image:yhdK_context.gif]] | ||
Revision as of 12:26, 13 May 2013
- Description: anti-SigM protein
| Gene name | yhdK |
| Synonyms | |
| Essential | no |
| Product | anti-SigM protein |
| Function | control of SigM activity |
| Gene expression levels in SubtiExpress: yhdK | |
| Interactions involving this protein in SubtInteract: YhdK | |
| MW, pI | 10 kDa, 8.134 |
| Gene length, protein length | 288 bp, 96 aa |
| Immediate neighbours | yhdJ, yhdL |
| Sequences | Protein DNA Advanced_DNA |
Genetic context 
This image was kindly provided by SubtiList
| |
Expression at a glance PubMed
| |
Contents
Categories containing this gene/protein
sigma factors and their control, cell envelope stress proteins (controlled by SigM, V, W, X, Y), membrane proteins
This gene is a member of the following regulons
The gene
Basic information
- Locus tag: BSU09500
Phenotypes of a mutant
Database entries
- DBTBS entry: [1]
- SubtiList entry: [2]
Additional information
The protein
Basic information/ Evolution
- Catalyzed reaction/ biological activity:
- Protein family:
- Paralogous protein(s):
Extended information on the protein
- Kinetic information:
- Domains:
- Modification:
- Cofactor(s):
- Effectors of protein activity:
- Localization: cell membrane PubMed
Database entries
- Structure:
- UniProt: O07580
- KEGG entry: [3]
- E.C. number:
Additional information
Expression and regulation
- Regulatory mechanism:
- Additional information:
Biological materials
- Mutant:
- Expression vector:
- lacZ fusion:
- GFP fusion:
- two-hybrid system:
- Antibody:
Labs working on this gene/protein
Your additional remarks
References
Warawan Eiamphungporn, John D Helmann
The Bacillus subtilis sigma(M) regulon and its contribution to cell envelope stress responses.
Mol Microbiol: 2008, 67(4);830-48
[PubMed:18179421]
[WorldCat.org]
[DOI]
(P p)
Mika Yoshimura, Kei Asai, Yoshito Sadaie, Hirofumi Yoshikawa
Interaction of Bacillus subtilis extracytoplasmic function (ECF) sigma factors with the N-terminal regions of their potential anti-sigma factors.
Microbiology (Reading): 2004, 150(Pt 3);591-599
[PubMed:14993308]
[WorldCat.org]
[DOI]
(P p)
S Ishikawa, Y Hara, R Ohnishi, J Sekiguchi
Regulation of a new cell wall hydrolase gene, cwlF, which affects cell separation in Bacillus subtilis.
J Bacteriol: 1998, 180(9);2549-55
[PubMed:9573210]
[WorldCat.org]
[DOI]
(P p)
