Difference between revisions of "YhdF"

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(Categories containing this gene/protein)
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=Expression and regulation=
 
=Expression and regulation=
  
* '''Operon:''' ''ydhF'' (according to [http://dbtbs.hgc.jp/COG/prom/yhdF.html DBTBS])
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* '''Operon:'''  
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** ''[[citA]]-[[yhdF]]'' {{PubMed|22383849}}
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** ''[[yhdF]]'' {{PubMed|22383849}}
  
 
* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=yhdF_1022231_1023100_1 yhdF] {{PubMed|22383849}}
 
* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=yhdF_1022231_1023100_1 yhdF] {{PubMed|22383849}}
  
* '''Sigma factor:''' [[SigB]] [http://www.ncbi.nlm.nih.gov/pubmed/11544224 PubMed]  
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* '''Sigma factor:'''  
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** ''[[ydhF]]'': [[SigB]] [http://www.ncbi.nlm.nih.gov/pubmed/11544224 PubMed]  
  
 
* '''Regulation:'''  induced by stress ([[SigB]]) [http://www.ncbi.nlm.nih.gov/pubmed/11544224 PubMed]
 
* '''Regulation:'''  induced by stress ([[SigB]]) [http://www.ncbi.nlm.nih.gov/pubmed/11544224 PubMed]

Revision as of 16:20, 8 May 2013

  • Description: similar to glucose 1-dehydrogenase

Gene name yhdF
Synonyms
Essential no
Product unknown
Function unknown
Gene expression levels in SubtiExpress: yhdF
MW, pI 31 kDa, 5.161
Gene length, protein length 867 bp, 289 aa
Immediate neighbours citA, bcaP
Get the DNA and protein sequences
(Barbe et al., 2009)
Genetic context
YhdF context.gif
This image was kindly provided by SubtiList
Expression at a glance   PubMed
YhdF expression.png















Categories containing this gene/protein

general stress proteins (controlled by SigB), poorly characterized/ putative enzymes, sporulation proteins

This gene is a member of the following regulons

SigB regulon

The gene

Basic information

  • Locus tag: BSU09450

Phenotypes of a mutant

Database entries

  • DBTBS entry: [1]
  • SubtiList entry: [2]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Protein family: short-chain dehydrogenases/reductases (SDR) family (according to Swiss-Prot)
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:

Database entries

  • Structure:
  • KEGG entry: [3]
  • E.C. number:

Additional information

Expression and regulation

  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

A Petersohn, M Brigulla, S Haas, J D Hoheisel, U Völker, M Hecker
Global analysis of the general stress response of Bacillus subtilis.
J Bacteriol: 2001, 183(19);5617-31
[PubMed:11544224] [WorldCat.org] [DOI] (P p)