Difference between revisions of "YhcI"

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* '''Description:''' similar to [[ABC transporter]] (membrane protein) <br/><br/>
 
 
 
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Revision as of 13:05, 10 August 2012

Gene name yhcI
Synonyms
Essential no
Product ABC transporter (membrane protein)
Function unknown
Gene expression levels in SubtiExpress: yhcI
Interactions involving this protein in SubtInteract: YhcI
MW, pI 34 kDa, 6.336
Gene length, protein length 939 bp, 313 aa
Immediate neighbours yhcH, cspB
Get the DNA and protein sequences
(Barbe et al., 2009)
Genetic context
YhcI context.gif
This image was kindly provided by SubtiList
Expression at a glance   PubMed
YhcI expression.png
























Categories containing this gene/protein

ABC transporters, membrane proteins

This gene is a member of the following regulons

The gene

Basic information

  • Locus tag: BSU09090

Phenotypes of a mutant

Database entries

  • DBTBS entry: [1]
  • SubtiList entry: [2]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Protein family:
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:

Database entries

  • Structure:
  • KEGG entry: [3]
  • E.C. number:

Additional information

Expression and regulation

  • Sigma factor:
  • Regulation:
  • Regulatory mechanism:
  • Additional information:
    • the mRNA is substantially stabilized upon depletion of RNase Y (the half-life of the mRNA increases from 4 to 41 min) PubMed

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

Lehnik-Habrink M, Schaffer M, Mäder U, Diethmaier C, Herzberg C, Stülke J  
RNA processing in Bacillus subtilis: identification of targets of the essential RNase Y. 
Mol Microbiol. 2011 81(6): 1459-1473. 
PubMed:21815947

Y Quentin, G Fichant, F Denizot
Inventory, assembly and analysis of Bacillus subtilis ABC transport systems.
J Mol Biol: 1999, 287(3);467-84
[PubMed:10092453] [WorldCat.org] [DOI] (P p)