Difference between revisions of "YgzD"
| Line 35: | Line 35: | ||
<br/><br/><br/><br/> | <br/><br/><br/><br/> | ||
<br/><br/><br/><br/> | <br/><br/><br/><br/> | ||
| − | |||
| − | |||
| − | |||
| − | |||
<br/><br/> | <br/><br/> | ||
| Line 63: | Line 59: | ||
=== Additional information=== | === Additional information=== | ||
| − | |||
| − | |||
=The protein= | =The protein= | ||
| Line 72: | Line 66: | ||
* '''Catalyzed reaction/ biological activity:''' | * '''Catalyzed reaction/ biological activity:''' | ||
| − | * '''Protein family:''' | + | * '''Protein family:''' [[transcription factors of the Xre family|Xre family]] |
* '''Paralogous protein(s):''' | * '''Paralogous protein(s):''' | ||
| Line 136: | Line 130: | ||
=References= | =References= | ||
| − | + | <pubmed>23504016, </pubmed> | |
| − | |||
| − | |||
[[Category:Protein-coding genes]] | [[Category:Protein-coding genes]] | ||
Revision as of 18:18, 11 June 2014
- Description: similar to transcription regulator (Xre family)
| Gene name | ygzD |
| Synonyms | |
| Essential | - |
| Product | putative HTH-type transcriptional regulator |
| Function | unknown |
| Gene expression levels in SubtiExpress: ygzD | |
| MW, pI | 7.6 kda, 7.833 |
| Gene length, protein length | 198 bp, 66 aa |
| Immediate neighbours | ygaO, trnSL-Gly1 |
| Gene sequence (+200bp) | Protein sequence |
| Genetic context File:YgzD context.gif | |
[None Expression at a glance] PubMed
| |
Contents
Categories containing this gene/protein
transcription factors and their control
This gene is a member of the following regulons
The gene
Basic information
- Locus tag: BSU08899
Phenotypes of a mutant
Database entries
- BsubCyc: BSU08899
- DBTBS entry: no entry
- SubtiList entry: no entry
Additional information
The protein
Basic information/ Evolution
- Catalyzed reaction/ biological activity:
- Protein family: Xre family
- Paralogous protein(s):
Extended information on the protein
- Kinetic information:
- Domains:
- Modification:
- Cofactor(s):
- Effectors of protein activity:
Database entries
- BsubCyc: BSU08899
- Structure:
- UniProt: C0H3X9
- KEGG entry:
- E.C. number:
Additional information
Expression and regulation
- Operon:
- Sigma factor:
- Regulation:
- Regulatory mechanism:
- Additional information:
Biological materials
- Mutant:
- Expression vector:
- lacZ fusion:
- GFP fusion:
- two-hybrid system:
- Antibody:
Labs working on this gene/protein
Your additional remarks
References
Semen A Leyn, Marat D Kazanov, Natalia V Sernova, Ekaterina O Ermakova, Pavel S Novichkov, Dmitry A Rodionov
Genomic reconstruction of the transcriptional regulatory network in Bacillus subtilis.
J Bacteriol: 2013, 195(11);2463-73
[PubMed:23504016]
[WorldCat.org]
[DOI]
(I p)
