Difference between revisions of "YgaF"
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|style="background:#ABCDEF;" align="center"|'''Function''' || resistance against oxidative stress | |style="background:#ABCDEF;" align="center"|'''Function''' || resistance against oxidative stress | ||
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| − | |colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http:// | + | |colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU08720 ygaF] |
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|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 17 kDa, 5.857 | |style="background:#ABCDEF;" align="center"| '''MW, pI''' || 17 kDa, 5.857 | ||
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|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[gsaB]]'', ''[[perR]]'' | |style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[gsaB]]'', ''[[perR]]'' | ||
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| − | | | + | |style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU08720 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU08720 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU08720 Advanced_DNA] |
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|colspan="2" | '''Genetic context''' <br/> [[Image:ygaF_context.gif]] | |colspan="2" | '''Genetic context''' <br/> [[Image:ygaF_context.gif]] | ||
Revision as of 12:24, 13 May 2013
- Description: similar to thioredoxin-dependent hydroperoxide peroxidase
| Gene name | ygaF |
| Synonyms | |
| Essential | no |
| Product | unknown |
| Function | resistance against oxidative stress |
| Gene expression levels in SubtiExpress: ygaF | |
| MW, pI | 17 kDa, 5.857 |
| Gene length, protein length | 471 bp, 157 aa |
| Immediate neighbours | gsaB, perR |
| Sequences | Protein DNA Advanced_DNA |
Genetic context 
This image was kindly provided by SubtiList
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Expression at a glance PubMed
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Contents
Categories containing this gene/protein
resistance against oxidative and electrophile stress
This gene is a member of the following regulons
The gene
Basic information
- Locus tag: BSU08720
Phenotypes of a mutant
Database entries
- DBTBS entry: no entry
- SubtiList entry: [1]
Additional information
- The E. coli homolog: bcp
The protein
Basic information/ Evolution
- Catalyzed reaction/ biological activity: 2 R'-SH + ROOH = R'-S-S-R' + H2O + ROH (according to Swiss-Prot)
- Protein family: thioredoxin domain (according to Swiss-Prot)
- Paralogous protein(s):
Extended information on the protein
- Kinetic information:
- Domains:
- Modification:
- Cofactor(s):
- Effectors of protein activity:
Database entries
- Structure:
- UniProt: Q796Y8
- KEGG entry: [2]
- E.C. number:
Additional information
Expression and regulation
- Operon:
- Sigma factor:
- Regulation:
- Regulatory mechanism:
- Additional information:
Biological materials
- Mutant:
- Expression vector:
- lacZ fusion:
- GFP fusion:
- two-hybrid system:
- Antibody:
Labs working on this gene/protein
Your additional remarks
References
W Jeong, M K Cha, I H Kim
Thioredoxin-dependent hydroperoxide peroxidase activity of bacterioferritin comigratory protein (BCP) as a new member of the thiol-specific antioxidant protein (TSA)/Alkyl hydroperoxide peroxidase C (AhpC) family.
J Biol Chem: 2000, 275(4);2924-30
[PubMed:10644761]
[WorldCat.org]
[DOI]
(P p)
