Difference between revisions of "YfmS"

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|style="background:#ABCDEF;" align="center"|'''Function''' || control of chemotaxis
 
|style="background:#ABCDEF;" align="center"|'''Function''' || control of chemotaxis
 
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|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://cellpublisher.gobics.de/subtiexpress/ ''Subti''Express]''': [http://cellpublisher.gobics.de/subtiexpress/bsu/BSU07360 yfmS]
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|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU07360 yfmS]
 
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|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 30 kDa, 4.527   
 
|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 30 kDa, 4.527   
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|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[yfmT]]'', ''[[yfmR]]''
 
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[yfmT]]'', ''[[yfmR]]''
 
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|colspan="2" style="background:#FAF8CC;" align="center"|'''Get the DNA and protein [http://srs.ebi.ac.uk/srsbin/cgi-bin/wgetz?-e+&#91;EMBLCDS:CAB12555&#93;+-newId sequences] <br/> (Barbe ''et al.'', 2009)'''
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|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU07360 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU07360 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU07360 Advanced_DNA]
 
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|colspan="2" | '''Genetic context''' <br/> [[Image:yfmS_context.gif]]
 
|colspan="2" | '''Genetic context''' <br/> [[Image:yfmS_context.gif]]

Revision as of 12:20, 13 May 2013

  • Description: soluble chemotaxis receptor

Gene name yfmS
Synonyms
Essential no
Product soluble chemotaxis receptor
Function control of chemotaxis
Gene expression levels in SubtiExpress: yfmS
MW, pI 30 kDa, 4.527
Gene length, protein length 858 bp, 286 aa
Immediate neighbours yfmT, yfmR
Sequences Protein DNA Advanced_DNA
Genetic context
YfmS context.gif
This image was kindly provided by SubtiList
Expression at a glance   PubMed
YfmS expression.png
























Categories containing this gene/protein

motility and chemotaxis

This gene is a member of the following regulons

SigD regulon

The gene

Basic information

  • Locus tag: BSU07360

Phenotypes of a mutant

Database entries

  • DBTBS entry: [1]
  • SubtiList entry: [2]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Protein family:
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:

Database entries

  • Structure:
  • KEGG entry: [3]
  • E.C. number:

Additional information

Expression and regulation

  • Regulation:
  • Regulatory mechanism:
  • Additional information:
    • in minimal medium, YfmS is present with 4,200 +/- 800 molecules per cell PubMed

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

Vincent J Cannistraro, George D Glekas, Christopher V Rao, George W Ordal
Cellular stoichiometry of the chemotaxis proteins in Bacillus subtilis.
J Bacteriol: 2011, 193(13);3220-7
[PubMed:21515776] [WorldCat.org] [DOI] (I p)

Masakuni Serizawa, Hiroki Yamamoto, Hirotake Yamaguchi, Yasutaro Fujita, Kazuo Kobayashi, Naotake Ogasawara, Junichi Sekiguchi
Systematic analysis of SigD-regulated genes in Bacillus subtilis by DNA microarray and Northern blotting analyses.
Gene: 2004, 329;125-36
[PubMed:15033535] [WorldCat.org] [DOI] (P p)

Hiroki Yamamoto, Shigeki Uchiyama, Fajar Aji Nugroho, Junichi Sekiguchi
A 23.4 kb segment at the 69 degrees-70 degrees region of the Bacillus subtilis genome.
Microbiology (Reading): 1997, 143 ( Pt 4);1317-1320
[PubMed:9141694] [WorldCat.org] [DOI] (P p)