Difference between revisions of "YfmI"

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|style="background:#ABCDEF;" align="center"|'''Function''' || unknown
 
|style="background:#ABCDEF;" align="center"|'''Function''' || unknown
 
|-
 
|-
|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://cellpublisher.gobics.de/subtiexpress/ ''Subti''Express]''': [http://cellpublisher.gobics.de/subtiexpress/bsu/BSU07460 yfmI]
+
|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU07460 yfmI]
 
|-
 
|-
 
|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 45 kDa, 10.002   
 
|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 45 kDa, 10.002   
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|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[yfmJ]]'', ''[[yfmG]]''
 
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[yfmJ]]'', ''[[yfmG]]''
 
|-
 
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|colspan="2" style="background:#FAF8CC;" align="center"|'''Get the DNA and protein [http://srs.ebi.ac.uk/srsbin/cgi-bin/wgetz?-e+&#91;EMBLCDS:CAB12575&#93;+-newId sequences] <br/> (Barbe ''et al.'', 2009)'''
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|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU07460 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU07460 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU07460 Advanced_DNA]
 
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|colspan="2" | '''Genetic context''' <br/> [[Image:yfmI_context.gif]]
 
|colspan="2" | '''Genetic context''' <br/> [[Image:yfmI_context.gif]]

Revision as of 12:20, 13 May 2013

  • Description: similar to macrolide-efflux transporter

Gene name yfmI
Synonyms
Essential no
Product unknown
Function unknown
Gene expression levels in SubtiExpress: yfmI
MW, pI 45 kDa, 10.002
Gene length, protein length 1218 bp, 406 aa
Immediate neighbours yfmJ, yfmG
Sequences Protein DNA Advanced_DNA
Genetic context
YfmI context.gif
This image was kindly provided by SubtiList
Expression at a glance   PubMed
YfmI expression.png















Categories containing this gene/protein

transporters/ other, resistance against toxins/ antibiotics, membrane proteins

This gene is a member of the following regulons

AbrB regulon, Spo0A regulon

The gene

Basic information

  • Locus tag: BSU07460

Phenotypes of a mutant

Database entries

  • DBTBS entry: [1]
  • SubtiList entry: [2]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Protein family: major facilitator superfamily (according to Swiss-Prot)
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:

Database entries

  • Structure:
  • KEGG entry: [3]
  • E.C. number:

Additional information

Expression and regulation

  • Regulation:
    • expressed under conditions that trigger sporulation (Spo0A) PubMed

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

Additional publications: PubMed

Irnov Irnov, Cynthia M Sharma, Jörg Vogel, Wade C Winkler
Identification of regulatory RNAs in Bacillus subtilis.
Nucleic Acids Res: 2010, 38(19);6637-51
[PubMed:20525796] [WorldCat.org] [DOI] (I p)

Virginie Molle, Masaya Fujita, Shane T Jensen, Patrick Eichenberger, José E González-Pastor, Jun S Liu, Richard Losick
The Spo0A regulon of Bacillus subtilis.
Mol Microbiol: 2003, 50(5);1683-701
[PubMed:14651647] [WorldCat.org] [DOI] (P p)