Difference between revisions of "YfmI"

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m (Reverted edits by 134.76.70.252 (talk) to last revision by Umaeder)
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* '''Operon:''' ''[[yfmI]]-[[yfmJ]]'' (according to [http://dbtbs.hgc.jp/COG/prom/yfmIJ.html DBTBS])
 
* '''Operon:''' ''[[yfmI]]-[[yfmJ]]'' (according to [http://dbtbs.hgc.jp/COG/prom/yfmIJ.html DBTBS])
  
* '''[[Sigma factor]]:'''  
+
* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=yfmI_819311_820531_-1 yfmI] {{PubMed|22383849}}
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 +
* '''Sigma factor:'''  
  
 
* '''Regulation:'''  
 
* '''Regulation:'''  

Revision as of 15:59, 12 April 2012

  • Description: similar to macrolide-efflux transporter

Gene name yfmI
Synonyms
Essential no
Product unknown
Function unknown
MW, pI 45 kDa, 10.002
Gene length, protein length 1218 bp, 406 aa
Immediate neighbours yfmJ, yfmH
Get the DNA and protein sequences
(Barbe et al., 2009)
Genetic context
YfmI context.gif
This image was kindly provided by SubtiList



Categories containing this gene/protein

transporters/ other, resistance against toxins/ antibiotics, membrane proteins

This gene is a member of the following regulons

AbrB regulon, Spo0A regulon

The gene

Basic information

  • Locus tag: BSU07460

Phenotypes of a mutant

Database entries

  • DBTBS entry: [1]
  • SubtiList entry: [2]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Protein family: major facilitator superfamily (according to Swiss-Prot)
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:
  • Interactions:
  • Localization: cell membrane (according to Swiss-Prot)

Database entries

  • Structure:
  • KEGG entry: [3]
  • E.C. number:

Additional information

Expression and regulation

  • Sigma factor:
  • Regulation:
    • expressed under conditions that trigger sporulation (Spo0A) PubMed

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

Additional publications: PubMed

Irnov Irnov, Cynthia M Sharma, Jörg Vogel, Wade C Winkler
Identification of regulatory RNAs in Bacillus subtilis.
Nucleic Acids Res: 2010, 38(19);6637-51
[PubMed:20525796] [WorldCat.org] [DOI] (I p)

Virginie Molle, Masaya Fujita, Shane T Jensen, Patrick Eichenberger, José E González-Pastor, Jun S Liu, Richard Losick
The Spo0A regulon of Bacillus subtilis.
Mol Microbiol: 2003, 50(5);1683-701
[PubMed:14651647] [WorldCat.org] [DOI] (P p)