Difference between revisions of "YesW"

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= This gene is a member of the following [[regulons]] =
 
= This gene is a member of the following [[regulons]] =
{{SubtiWiki regulon|[[YesS regulon]]}}
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{{SubtiWiki regulon|[[RhgR regulon]]}}
  
 
=The gene=
 
=The gene=
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=== Additional information===
 
=== Additional information===
 
 
 
  
 
=The protein=
 
=The protein=
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=Expression and regulation=
 
=Expression and regulation=
  
* '''Operon:''' ''[[yesS]]-[[yesT]]-[[yesU]]-[[yesV]]-[[yesW]]-[[yesX]]-[[yesY]]-[[yesZ]]'' {{PubMed|19651770}}
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* '''Operon:''' ''[[rhgR]]-[[yesT]]-[[yesU]]-[[yesV]]-[[yesW]]-[[yesX]]-[[yesY]]-[[yesZ]]'' {{PubMed|19651770}}
  
 
* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=yesW_770234_772096_1 yesW] {{PubMed|22383849}}
 
* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=yesW_770234_772096_1 yesW] {{PubMed|22383849}}
  
* '''Sigma factor:'''  
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* '''[[Sigma factor]]:'''  
  
* '''Regulation:''' induced by pectin ([[YesS]]) {{PubMed|19651770}}
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* '''Regulation:''' induced by pectin ([[RhgR]]) {{PubMed|19651770}}
 
   
 
   
* '''Regulatory mechanism:''' [[YesS]]: transcriptional activation {{PubMed|19651770}}
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* '''Regulatory mechanism:''' [[RhgR]]: transcriptional activation {{PubMed|19651770}}
  
 
* '''Additional information:'''
 
* '''Additional information:'''

Revision as of 16:04, 7 June 2014

  • Description: rhamnogalacturonan lyase, generates oligosaccharides

Gene name yesW
Synonyms
Essential no
Product rhamnogalacturonan lyase, generates oligosaccharides
Function utilization of rhamnogalacturonan
Gene expression levels in SubtiExpress: yesW
MW, pI 67 kDa, 5.966
Gene length, protein length 1860 bp, 620 aa
Immediate neighbours yesV, yesX
Sequences Protein DNA DNA_with_flanks
Genetic context
YesW context.gif
This image was kindly provided by SubtiList
Expression at a glance   PubMed
YesW expression.png















Categories containing this gene/protein

utilization of specific carbon sources

This gene is a member of the following regulons

RhgR regulon

The gene

Basic information

  • Locus tag: BSU07050

Phenotypes of a mutant

Database entries

  • DBTBS entry: no entry
  • SubtiList entry: [1]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Protein family: FG-GAP repeat (according to Swiss-Prot)
  • Paralogous protein(s): YesX

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:

Database entries

  • KEGG entry: [2]
  • E.C. number:

Additional information

Expression and regulation

  • Regulatory mechanism: RhgR: transcriptional activation PubMed
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References