yesW
168
rhamnogalacturonan lyase, generates oligosaccharides
locus
BSU_07050
Molecular weight
67.41 kDa
pI
5.97
function
utilization of rhamnogalacturonan
product
rhamnogalacturonan lyase, generates oligosaccharides
essential
no
ec
null
synonyms
yesW
Outlinks
Genomic Context
Categories containing this gene/protein
List of homologs in different organisms
This gene is a member of the following regulons
Gene
Coordinates
770,234 772,096
The protein
Catalyzed reaction/ biological activity
Endotype eliminative cleavage of L-alpha-rhamnopyranosyl-(1->4)-alpha-D-galactopyranosyluronic acid bonds of rhamnogalacturonan I domains in ramified hairy regions of pectin leaving L-rhamnopyranose at the reducing end and 4-deoxy-4,5-unsaturated D-galactopyranosyluronic acid at the non-reducing end (according to UniPort)
Protein family
polysaccharide lyase 11 family (with [protein|217BAA94FB926CDA7CA8800BC6B08371792CEE31|yesX], according to UniProt)
[wiki|Domains]
Rhamnose is bound near the active site, but there are also additional rhamnose-binding sites far away from the active site, which possibly function as a carbohydrate-binding region (according to UniProt)
Structure
[PDB|2Z8R]
[AF|O31526]
Paralogous protein(s)
[protein|217BAA94FB926CDA7CA8800BC6B08371792CEE31|yesX]
[wiki|Localization]
secreted (according to Swiss-Prot)
Biological materials
Mutant
BKE07050 ([gene|65704140C3B95619D6C0962CB40452D373E2740F|yesW]::erm trpC2) available at [http://bgsc.org/getdetail.php?bgscid=BKE07050 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATTTATCTGTAAGCGCTTA, downstream forward: _UP4_TAACTGAAAGGGGGAAGGAA
BKK07050 ([gene|65704140C3B95619D6C0962CB40452D373E2740F|yesW]::kan trpC2) available at [http://bgsc.org/getdetail.php?bgscid=BKK07050 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATTTATCTGTAAGCGCTTA, downstream forward: _UP4_TAACTGAAAGGGGGAAGGAA
References
Reviews
Original Publications
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Time of last update: 2024-04-24 10:48:30
Author of last update: Jstuelk