Difference between revisions of "YdjA"

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|style="background:#ABCDEF;" align="center"|'''Function''' || BsuM DNA restriction
 
|style="background:#ABCDEF;" align="center"|'''Function''' || BsuM DNA restriction
 
|-
 
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|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://cellpublisher.gobics.de/subtiexpress/ ''Subti''Express]''': [http://cellpublisher.gobics.de/subtiexpress/bsu/BSU06110 ydjA]
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|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU06110 ydjA]
 
|-
 
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|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 54 kDa, 8.332   
 
|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 54 kDa, 8.332   
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|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[ydiS]]'', ''[[ydjB]]''
 
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[ydiS]]'', ''[[ydjB]]''
 
|-
 
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|colspan="2" style="background:#FAF8CC;" align="center"|'''Get the DNA and protein [http://srs.ebi.ac.uk/srsbin/cgi-bin/wgetz?-e+&#91;EMBLCDS:CAB12430&#93;+-newId sequences] <br/> (Barbe ''et al.'', 2009)'''
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|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU06110 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU06110 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU06110 Advanced_DNA]
 
|-
 
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|colspan="2" | '''Genetic context''' <br/> [[Image:ydjA_context.gif]]
 
|colspan="2" | '''Genetic context''' <br/> [[Image:ydjA_context.gif]]

Revision as of 12:16, 13 May 2013

  • Description: component of the BsuM DNA restriction system

Gene name ydjA
Synonyms
Essential no
Product unknown
Function BsuM DNA restriction
Gene expression levels in SubtiExpress: ydjA
MW, pI 54 kDa, 8.332
Gene length, protein length 1395 bp, 465 aa
Immediate neighbours ydiS, ydjB
Sequences Protein DNA Advanced_DNA
Genetic context
YdjA context.gif
This image was kindly provided by SubtiList
Expression at a glance   PubMed
YdjA expression.png
























Categories containing this gene/protein

DNA restriction/ modification

This gene is a member of the following regulons

The gene

Basic information

  • Locus tag: BSU06110

Phenotypes of a mutant

Database entries

  • DBTBS entry: [1]
  • SubtiList entry: [2]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Protein family:
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:

Database entries

  • Structure:
  • KEGG entry: [3]
  • E.C. number:

Additional information

Expression and regulation

  • Sigma factor:
  • Regulation:
  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

Tomoko Maehara, Mitsuhiro Itaya, Mitsuo Ogura, Teruo Tanaka
Effect of Bacillus subtilis BsuM restriction-modification on plasmid transfer by polyethylene glycol-induced protoplast fusion.
FEMS Microbiol Lett: 2011, 325(1);49-55
[PubMed:22092861] [WorldCat.org] [DOI] (I p)

Hideyuki Ohshima, Satoshi Matsuoka, Kei Asai, Yoshito Sadaie
Molecular organization of intrinsic restriction and modification genes BsuM of Bacillus subtilis Marburg.
J Bacteriol: 2002, 184(2);381-9
[PubMed:11751814] [WorldCat.org] [DOI] (P p)