Difference between revisions of "YdiR"

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= [[Categories]] containing this gene/protein =
 
= [[Categories]] containing this gene/protein =
{{SubtiWiki category|[[DNA restriction/ modification]]}}
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{{SubtiWiki category|[[DNA restriction/ modification]]}},
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{{SubtiWiki category|[[prophage 3]]}}
  
 
= This gene is a member of the following [[regulons]] =
 
= This gene is a member of the following [[regulons]] =
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* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=ydiR_659623_660564_1 ydiR] {{PubMed|22383849}}
 
* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=ydiR_659623_660564_1 ydiR] {{PubMed|22383849}}
  
* '''Sigma factor:'''  
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* '''[[Sigma factor]]:'''  
  
 
* '''Regulation:'''  
 
* '''Regulation:'''  

Revision as of 11:41, 11 September 2013

  • Description: component of the BsuM DNA restriction system

Gene name ydiR
Synonyms
Essential no
Product unknown
Function BsuM DNA restriction
Gene expression levels in SubtiExpress: ydiR
MW, pI 35 kDa, 4.385
Gene length, protein length 939 bp, 313 aa
Immediate neighbours ydzW/7, ydiS
Sequences Protein DNA DNA_with_flanks
Genetic context
YdiR context.gif
This image was kindly provided by SubtiList
Expression at a glance   PubMed
YdiR expression.png















Categories containing this gene/protein

DNA restriction/ modification, prophage 3

This gene is a member of the following regulons

The gene

Basic information

  • Locus tag: BSU06090

Phenotypes of a mutant

Database entries

  • DBTBS entry: [1]
  • SubtiList entry: [2]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Protein family:
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:

Database entries

  • Structure:
  • KEGG entry: [3]
  • E.C. number:

Additional information

Expression and regulation

  • Regulation:
  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

Tomoko Maehara, Mitsuhiro Itaya, Mitsuo Ogura, Teruo Tanaka
Effect of Bacillus subtilis BsuM restriction-modification on plasmid transfer by polyethylene glycol-induced protoplast fusion.
FEMS Microbiol Lett: 2011, 325(1);49-55
[PubMed:22092861] [WorldCat.org] [DOI] (I p)

Hideyuki Ohshima, Satoshi Matsuoka, Kei Asai, Yoshito Sadaie
Molecular organization of intrinsic restriction and modification genes BsuM of Bacillus subtilis Marburg.
J Bacteriol: 2002, 184(2);381-9
[PubMed:11751814] [WorldCat.org] [DOI] (P p)