Difference between revisions of "YdiR"

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|colspan="2" | '''Genetic context''' <br/> [[Image:ydiR_context.gif]]
 
|colspan="2" | '''Genetic context''' <br/> [[Image:ydiR_context.gif]]
 
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|colspan="2" |'''[http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=ydiR_659623_660564_1 Expression at a glance]'''&#160;&#160;&#160;{{PubMed|22383849}}<br/>[[Image:ydiR_expression.png|500px]]
 
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Revision as of 15:16, 18 April 2012

  • Description: component of the BsuM DNA restriction system

Gene name ydiR
Synonyms
Essential no
Product unknown
Function BsuM DNA restriction
MW, pI 35 kDa, 4.385
Gene length, protein length 939 bp, 313 aa
Immediate neighbours ydzW/7, ydiS
Get the DNA and protein sequences
(Barbe et al., 2009)
Genetic context
YdiR context.gif
This image was kindly provided by SubtiList
Expression at a glance   PubMed
YdiR expression.png
























Categories containing this gene/protein

DNA restriction/ modification

This gene is a member of the following regulons

The gene

Basic information

  • Locus tag: BSU06090

Phenotypes of a mutant

Database entries

  • DBTBS entry: [1]
  • SubtiList entry: [2]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Protein family:
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:

Database entries

  • Structure:
  • KEGG entry: [3]
  • E.C. number:

Additional information

Expression and regulation

  • Sigma factor:
  • Regulation:
  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

Tomoko Maehara, Mitsuhiro Itaya, Mitsuo Ogura, Teruo Tanaka
Effect of Bacillus subtilis BsuM restriction-modification on plasmid transfer by polyethylene glycol-induced protoplast fusion.
FEMS Microbiol Lett: 2011, 325(1);49-55
[PubMed:22092861] [WorldCat.org] [DOI] (I p)

Hideyuki Ohshima, Satoshi Matsuoka, Kei Asai, Yoshito Sadaie
Molecular organization of intrinsic restriction and modification genes BsuM of Bacillus subtilis Marburg.
J Bacteriol: 2002, 184(2);381-9
[PubMed:11751814] [WorldCat.org] [DOI] (P p)