Difference between revisions of "YdhU/1"

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|style="background:#ABCDEF;" align="center"|'''Function''' || unknown
 
|style="background:#ABCDEF;" align="center"|'''Function''' || unknown
 
|-
 
|-
|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 16 kDa, 5.165 
+
|style="background:#ABCDEF;" align="center"| '''MW, pI''' ||   -,-
 
|-
 
|-
|style="background:#ABCDEF;" align="center"| '''Gene length, protein length''' || 453 bp, 151 aa
+
|style="background:#ABCDEF;" align="center"| '''Gene length, protein length''' || 729 bp, -
 
|-
 
|-
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[gmuG]]'', ''[[trnE-Arg]]''
+
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[gmuG]]'', ''[[ydhU/2]]''
 
|-
 
|-
 
|style="background:#FAF8CC;" align="center"|'''[http://subtiwiki.uni-goettingen.de/ydhU_nucleotide.txt    Gene sequence      (+200bp)  ]'''  
 
|style="background:#FAF8CC;" align="center"|'''[http://subtiwiki.uni-goettingen.de/ydhU_nucleotide.txt    Gene sequence      (+200bp)  ]'''  

Revision as of 11:21, 8 November 2011

  • Description: similar to Mn catalase

Gene name ydhU/1
Synonyms ydhU
Essential no
Product unknown
Function unknown
MW, pI -,-
Gene length, protein length 729 bp, -
Immediate neighbours gmuG, ydhU/2
Gene sequence (+200bp) Protein sequence
Genetic context
YdhU context.gif
This image was kindly provided by SubtiList



Categories containing this gene/protein

resistance against oxidative and electrophile stress, pseudogenes

This gene is a member of the following regulons

Fur regulon

The gene

Basic information

  • Locus tag:

Phenotypes of a mutant

thsi is a pseudogene in B. subtilis 168

Database entries

  • DBTBS entry: [1]
  • SubtiList entry: [2]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Protein family: manganese catalase family (according to Swiss-Prot)
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:
  • Interactions:
  • Localization:

Database entries

  • Structure:
  • KEGG entry: [3]
  • E.C. number:

Additional information

Expression and regulation

  • Regulation: induced by iron starvation (Fur) PubMed
  • Regulatory mechanism: Fur: transcription repression PubMed
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

Noel Baichoo, Tao Wang, Rick Ye, John D Helmann
Global analysis of the Bacillus subtilis Fur regulon and the iron starvation stimulon.
Mol Microbiol: 2002, 45(6);1613-29
[PubMed:12354229] [WorldCat.org] [DOI] (P p)