Difference between revisions of "YdhU/1"

From SubtiWiki
Jump to: navigation, search
Line 39: Line 39:
  
 
===Phenotypes of a mutant ===
 
===Phenotypes of a mutant ===
 +
thsi is a pseudogene in ''B. subtilis'' 168
  
 
=== Database entries ===
 
=== Database entries ===
Line 88: Line 89:
 
=Expression and regulation=
 
=Expression and regulation=
  
* '''Operon:'''  
+
* '''Operon:''' ''ydhU'' {{PubMed|12354229}}
  
 
* '''[[Sigma factor]]:'''  
 
* '''[[Sigma factor]]:'''  
  
* '''Regulation:'''  
+
* '''Regulation:''' induced by iron starvation ([[Fur]]) {{PubMed|12354229}}
  
* '''Regulatory mechanism:'''  
+
* '''Regulatory mechanism:''' Fur: transcription repression {{PubMed|12354229}}
  
 
* '''Additional information:'''  
 
* '''Additional information:'''  
Line 117: Line 118:
  
 
=References=
 
=References=
 
+
<pubmed>12354229 </pubmed>
 
[[Category:Pseudogenes]]
 
[[Category:Pseudogenes]]

Revision as of 18:51, 23 August 2009

  • Description: similar to Mn catalase

Gene name ydhU/1
Synonyms ydhU
Essential no
Product unknown
Function unknown
MW, pI 16 kDa, 5.165
Gene length, protein length 453 bp, 151 aa
Immediate neighbours gmuG, trnE-Arg
Gene sequence (+200bp) Protein sequence
Genetic context
YdhU context.gif
This image was kindly provided by SubtiList



The gene

Basic information

  • Locus tag:

Phenotypes of a mutant

thsi is a pseudogene in B. subtilis 168

Database entries

  • DBTBS entry: [1]
  • SubtiList entry: [2]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Protein family: manganese catalase family (according to Swiss-Prot)
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:
  • Interactions:
  • Localization:

Database entries

  • Structure:
  • KEGG entry: [3]
  • E.C. number:

Additional information

Expression and regulation

  • Regulation: induced by iron starvation (Fur) PubMed
  • Regulatory mechanism: Fur: transcription repression PubMed
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References