Difference between revisions of "YdhU/1"

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Revision as of 12:40, 16 May 2013

  • Description: similar to Mn catalase, inactive pseudogene in strain 168

Gene name ydhU/1
Synonyms ydhU
Essential no
Product unknown
Function unknown
Gene expression levels in SubtiExpress: ydhU/1
MW, pI - , -
Gene length, protein length 726 bp, -
Immediate neighbours gmuG, ydhU/2
Gene sequence (+200bp) Protein sequence
Genetic context
YdhU context.gif
This image was kindly provided by SubtiList
Expression at a glance   PubMed
500px
























Categories containing this gene/protein

resistance against oxidative and electrophile stress, pseudogenes

This gene is a member of the following regulons

Fur regulon

The gene

Basic information

  • Locus tag: BSU05890

Phenotypes of a mutant

thsi is a pseudogene in B. subtilis 168

Database entries

  • DBTBS entry: [1]
  • SubtiList entry: [2]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Protein family: manganese catalase family (according to Swiss-Prot)
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:

Database entries

  • Structure:
  • KEGG entry: [3]
  • E.C. number:

Additional information

Expression and regulation

  • Sigma factor:
  • Regulation: induced by iron starvation (Fur) PubMed
  • Regulatory mechanism: Fur: transcription repression PubMed
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

Noel Baichoo, Tao Wang, Rick Ye, John D Helmann
Global analysis of the Bacillus subtilis Fur regulon and the iron starvation stimulon.
Mol Microbiol: 2002, 45(6);1613-29
[PubMed:12354229] [WorldCat.org] [DOI] (P p)