Difference between revisions of "YdhF"

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|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[ydhE]]'', ''[[phoB]]''
 
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[ydhE]]'', ''[[phoB]]''
 
|-
 
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|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU05730 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU05730 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU05730 Advanced_DNA]
+
|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU05730 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU05730 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU05730 DNA_with_flanks]
 
|-
 
|-
 
|colspan="2" | '''Genetic context''' <br/> [[Image:ydhF_context.gif]]
 
|colspan="2" | '''Genetic context''' <br/> [[Image:ydhF_context.gif]]

Revision as of 09:35, 14 May 2013

  • Description: unknown

Gene name ydhF
Synonyms
Essential no
Product unknown
Function unknown
Gene expression levels in SubtiExpress: ydhF
Metabolic function and regulation of this protein in SubtiPathways:
Folate
MW, pI 26 kDa, 6.155
Gene length, protein length 708 bp, 236 aa
Immediate neighbours ydhE, phoB
Sequences Protein DNA DNA_with_flanks
Genetic context
YdhF context.gif
This image was kindly provided by SubtiList
Expression at a glance   PubMed
YdhF expression.png




























Categories containing this gene/protein

sporulation proteins

This gene is a member of the following regulons

PhoP regulon, SigE regulon

The gene

Basic information

  • Locus tag: BSU05730

Phenotypes of a mutant

Database entries

  • DBTBS entry: [1]
  • SubtiList entry: [2]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Protein family:
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:
  • Localization: extracellular (signal peptide) PubMed, lipid modification as retention signal

Database entries

  • Structure:
  • KEGG entry: [3]
  • E.C. number:

Additional information

Expression and regulation

  • Regulation:
    • expressed under conditions of phosphate limitation (PhoP) PubMed
  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

Birgit Voigt, Haike Antelmann, Dirk Albrecht, Armin Ehrenreich, Karl-Heinz Maurer, Stefan Evers, Gerhard Gottschalk, Jan Maarten van Dijl, Thomas Schweder, Michael Hecker
Cell physiology and protein secretion of Bacillus licheniformis compared to Bacillus subtilis.
J Mol Microbiol Biotechnol: 2009, 16(1-2);53-68
[PubMed:18957862] [WorldCat.org] [DOI] (I p)

Wael R Abdel-Fattah, Yinghua Chen, Amr Eldakak, F Marion Hulett
Bacillus subtilis phosphorylated PhoP: direct activation of the E(sigma)A- and repression of the E(sigma)E-responsive phoB-PS+V promoters during pho response.
J Bacteriol: 2005, 187(15);5166-78
[PubMed:16030210] [WorldCat.org] [DOI] (P p)

H Antelmann, C Scharf, M Hecker
Phosphate starvation-inducible proteins of Bacillus subtilis: proteomics and transcriptional analysis.
J Bacteriol: 2000, 182(16);4478-90
[PubMed:10913081] [WorldCat.org] [DOI] (P p)

W Liu, F M Hulett
Bacillus subtilis PhoP binds to the phoB tandem promoter exclusively within the phosphate starvation-inducible promoter.
J Bacteriol: 1997, 179(20);6302-10
[PubMed:9335276] [WorldCat.org] [DOI] (P p)