Difference between revisions of "YdhD"
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=== Additional information=== | === Additional information=== | ||
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* '''Kinetic information:''' | * '''Kinetic information:''' | ||
| − | * '''Domains:''' | + | * '''[[Domains]]:''' |
| + | ** contains a N-acetylglucosamine-polymer-binding [[LysM domain]] {{PubMed|18430080}} | ||
* '''Modification:''' | * '''Modification:''' | ||
| − | * ''' | + | * '''[[Cofactors]]:''' |
* '''Effectors of protein activity:''' | * '''Effectors of protein activity:''' | ||
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* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=ydhD_616672_617934_1 ydhD] {{PubMed|22383849}} | * '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=ydhD_616672_617934_1 ydhD] {{PubMed|22383849}} | ||
| − | * '''Sigma factor:''' [[SigE]] {{PubMed|11011148,15699190}} | + | * '''[[Sigma factor]]:''' [[SigE]] {{PubMed|11011148,15699190}} |
* '''Regulation:''' expressed during sporulation ([[SigE]]) | * '''Regulation:''' expressed during sporulation ([[SigE]]) | ||
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=References= | =References= | ||
| + | == Reviews== | ||
| + | <pubmed>18430080</pubmed> | ||
| + | == Original publications == | ||
<pubmed> 11011148,15699190</pubmed> | <pubmed> 11011148,15699190</pubmed> | ||
[[Category:Protein-coding genes]] | [[Category:Protein-coding genes]] | ||
Revision as of 15:05, 27 December 2013
- Description: probable peptidoglycan hydrolase
| Gene name | ydhD |
| Synonyms | |
| Essential | no |
| Product | unknown |
| Function | unknown |
| Gene expression levels in SubtiExpress: ydhD | |
| MW, pI | 48 kDa, 9.068 |
| Gene length, protein length | 1317 bp, 439 aa |
| Immediate neighbours | ydhC, ydhE |
| Sequences | Protein DNA DNA_with_flanks |
Genetic context 
This image was kindly provided by SubtiList
| |
Expression at a glance PubMed
| |
Contents
Categories containing this gene/protein
cell wall/ other, sporulation proteins
This gene is a member of the following regulons
The gene
Basic information
- Locus tag: BSU05710
Phenotypes of a mutant
Database entries
- DBTBS entry: [1]
- SubtiList entry: [2]
Additional information
The protein
Basic information/ Evolution
- Catalyzed reaction/ biological activity:
- Protein family: Chitinase class II subfamily (according to Swiss-Prot)
- Paralogous protein(s):
Extended information on the protein
- Kinetic information:
- Domains:
- contains a N-acetylglucosamine-polymer-binding LysM domain PubMed
- Modification:
- Effectors of protein activity:
- Localization:
- spore wall (according to Swiss-Prot)
Database entries
- Structure: 3CZ8
- UniProt: O05495
- KEGG entry: [3]
- E.C. number:
Additional information
Expression and regulation
- Operon: ydhD PubMed
- Regulation: expressed during sporulation (SigE)
- Regulatory mechanism:
- Additional information:
Biological materials
- Mutant:
- Expression vector:
- lacZ fusion:
- GFP fusion:
- two-hybrid system:
- Antibody:
Labs working on this gene/protein
Your additional remarks
References
Reviews
Girbe Buist, Anton Steen, Jan Kok, Oscar P Kuipers
LysM, a widely distributed protein motif for binding to (peptido)glycans.
Mol Microbiol: 2008, 68(4);838-47
[PubMed:18430080]
[WorldCat.org]
[DOI]
(I p)
Original publications
Leif Steil, Mónica Serrano, Adriano O Henriques, Uwe Völker
Genome-wide analysis of temporally regulated and compartment-specific gene expression in sporulating cells of Bacillus subtilis.
Microbiology (Reading): 2005, 151(Pt 2);399-420
[PubMed:15699190]
[WorldCat.org]
[DOI]
(P p)
T Kodama, H Takamatsu, K Asai, N Ogasawara, Y Sadaie, K Watabe
Synthesis and characterization of the spore proteins of Bacillus subtilis YdhD, YkuD, and YkvP, which carry a motif conserved among cell wall binding proteins.
J Biochem: 2000, 128(4);655-63
[PubMed:11011148]
[WorldCat.org]
[DOI]
(P p)
