ydgH

ydgH
168

similar to drug exporter

locus
BSU_05650
Molecular weight
95.29 kDa
pI
5.14
Protein length
Gene length
function
unknown
product
unknown
essential
no
ec
null
synonyms
ydgH

Genomic Context

Categories containing this gene/protein

List of homologs in different organisms, belongs to COG2409 (Galperin et al., 2021)

This gene is a member of the following regulons

Gene
Coordinates
609,388  612,045
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The protein
Protein family
resistance-nodulation-cell division (RND) (TC 2.A.6) family (with [protein|1B61298ECA583D2112AA56A88358E8A9A55D2C9D|ydfJ] and [protein|AAC32230E3E585932A876737131C3E2C15168B2A|swrC], according to UniProt)
Structure
[PDB|6AJF] (from Mycobacterium smegmatis, corresponds to aa 2 ... 370 and 686 ... 885, 24% identity) [pubmed|30682372]
[AF|P96706]
[wiki|Localization]
cell membrane (according to UniProt)
Expression and Regulation
Operons
genes
[gene|833F4B9ECB609D5EBAD0CAA55E1F601A5C1C3787|ydgG]-[gene|1632474628BEA113F297897D152276A1AB73BAE8|ydgH]
description
[Pubmed|16267290]
regulation
induced by DNA damage ([protein|search|LexA]) [Pubmed|16267290]
regulatory mechanism
[protein|D267AF38B0CF107042326E9B8F3DD3C9C85840E4|lexA]: repression, [Pubmed|16267290], in [regulon|protein:D267AF38B0CF107042326E9B8F3DD3C9C85840E4|lexA regulon]
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[gene|833F4B9ECB609D5EBAD0CAA55E1F601A5C1C3787|ydgG]→[gene|1632474628BEA113F297897D152276A1AB73BAE8|ydgH]

2024-02-24 10:32:19

ghost

44

e6eeda0069ad9243b72689582654b3e2748f74b9

AB6C7A5F537BF1933DB842601F21431DC5CF3B62

Biological materials
Mutant
MGNA-C161 (ydgH::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/2159 NBRP B. subtilis, Japan]
BKE05650 ([gene|1632474628BEA113F297897D152276A1AB73BAE8|ydgH]::erm  trpC2) available at [http://bgsc.org/getdetail.php?bgscid=BKE05650 BGSC],  [Pubmed|28189581], upstream reverse: _UP1_CCACTTGAATTTGATGATTG,  downstream forward: _UP4_TAATCGAGAGAAGAGTGATG
BKK05650 ([gene|1632474628BEA113F297897D152276A1AB73BAE8|ydgH]::kan  trpC2) available at [http://bgsc.org/getdetail.php?bgscid=BKK05650 BGSC],  [Pubmed|28189581], upstream reverse: _UP1_CCACTTGAATTTGATGATTG,  downstream forward: _UP4_TAATCGAGAGAAGAGTGATG
References
16267290,21630458,30682372

1632474628BEA113F297897D152276A1AB73BAE8

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Time of last update: 2024-03-28 19:31:33

Author of last update: Jstuelk