Difference between revisions of "YdfI"

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|style="background:#ABCDEF;" align="center"|'''Function''' || control of ''[[ydfJ]]'' expression
 
|style="background:#ABCDEF;" align="center"|'''Function''' || control of ''[[ydfJ]]'' expression
 
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|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://cellpublisher.gobics.de/subtiexpress/ ''Subti''Express]''': [http://cellpublisher.gobics.de/subtiexpress/bsu/BSU05420 ydfI]
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|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU05420 ydfI]
 
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|colspan="2" style="background:#FAF8CC;" align="center"| '''Interactions involving this protein in [http://cellpublisher.gobics.de/subtinteract/startpage/start/ ''Subt''Interact]''': [http://cellpublisher.gobics.de/subtinteract/interactionList/2/YdfI YdfI]
 
|colspan="2" style="background:#FAF8CC;" align="center"| '''Interactions involving this protein in [http://cellpublisher.gobics.de/subtinteract/startpage/start/ ''Subt''Interact]''': [http://cellpublisher.gobics.de/subtinteract/interactionList/2/YdfI YdfI]
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|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[ydfH]]'', ''[[ydfJ]]''
 
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[ydfH]]'', ''[[ydfJ]]''
 
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|colspan="2" style="background:#FAF8CC;" align="center"|'''Get the DNA and protein [http://srs.ebi.ac.uk/srsbin/cgi-bin/wgetz?-e+&#91;EMBLCDS:CAB12349&#93;+-newId sequences] <br/> (Barbe ''et al.'', 2009)'''
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|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU05420 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU05420 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU05420 Advanced_DNA]
 
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|colspan="2" | '''Genetic context''' <br/> [[Image:ydfI_context.gif]]
 
|colspan="2" | '''Genetic context''' <br/> [[Image:ydfI_context.gif]]

Revision as of 12:13, 13 May 2013

Gene name ydfI
Synonyms
Essential no
Product two-component response regulator
Function control of ydfJ expression
Gene expression levels in SubtiExpress: ydfI
Interactions involving this protein in SubtInteract: YdfI
MW, pI 23 kDa, 5.378
Gene length, protein length 639 bp, 213 aa
Immediate neighbours ydfH, ydfJ
Sequences Protein DNA Advanced_DNA
Genetic context
YdfI context.gif
This image was kindly provided by SubtiList
Expression at a glance   PubMed
YdfI expression.png
























Categories containing this gene/protein

transcription factors and their control, phosphoproteins

This gene is a member of the following regulons

The YdfI regulon:

The gene

Basic information

  • Locus tag: BSU05420

Phenotypes of a mutant

Database entries

  • DBTBS entry: [1]
  • SubtiList entry: [2]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Protein family:
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification: phosphorylation by YdfH on an Asp residue
  • Cofactor(s):
  • Effectors of protein activity:

Database entries

  • Structure:
  • KEGG entry: [3]
  • E.C. number:

Additional information

Expression and regulation

  • Sigma factor:
  • Regulation:
  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

Masakuni Serizawa, Junichi Sekiguchi
The Bacillus subtilis YdfHI two-component system regulates the transcription of ydfJ, a member of the RND superfamily.
Microbiology (Reading): 2005, 151(Pt 6);1769-1778
[PubMed:15941986] [WorldCat.org] [DOI] (P p)

C Fabret, V A Feher, J A Hoch
Two-component signal transduction in Bacillus subtilis: how one organism sees its world.
J Bacteriol: 1999, 181(7);1975-83
[PubMed:10094672] [WorldCat.org] [DOI] (P p)