ydeF

ydeF
168

similar to transcriptional regulator ([wiki|MocR/ GabR family])

locus
BSU_05180
Molecular weight
51.64 kDa
pI
6.09
Protein length
Gene length
function
unknown
product
unknown
essential
no
synonyms
ydeF

Genomic Context

Categories containing this gene/protein

List of homologs in different organisms, belongs to COG1167 (Galperin et al., 2021)

This gene is a member of the following regulons

Gene
Coordinates
564,704 → 566,101
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The protein
Protein family
[wiki|MocR/ GabR family] [Pubmed|22020104]
[wiki|class-I pyridoxal-phosphate-dependent aminotransferase family] (according to UniProt)
[wiki|Domains]
N-terminal DNA-binding helix-turn-helix motif; C-terminal domain is homologous to PLP-binding large domain of aminotransferases.
[wiki|HTH gntR-type domain] (aa 22-90) (according to UniProt)
[wiki|Cofactors]
PLP
Structure
[PDB|4MGR] ([protein|C7C36FAC0CE72226960FC7E8E016B8EC77AF1036|gabR], 23% identity) [pubmed|24127574]
[AF|P96663]
Biological materials
Mutant
MGNA-C082 (ydeF::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/2080 NBRP B. subtilis, Japan]
BKE05180 (Δ[gene|C2EB2BE786A5C155DE440E52CB430B25E70C8AA7|ydeF]::erm  trpC2) available at [http://bgsc.org/getdetail.php?bgscid=BKE05180 BGSC],  [Pubmed|28189581], upstream reverse: _UP1_CATGATACGCATCCTTTTTC,  downstream forward: _UP4_TAATATTGTTTGCCATACAA
BKK05180 (Δ[gene|C2EB2BE786A5C155DE440E52CB430B25E70C8AA7|ydeF]::kan  trpC2) available at [http://bgsc.org/getdetail.php?bgscid=BKK05180 BGSC],  [Pubmed|28189581], upstream reverse: _UP1_CATGATACGCATCCTTTTTC,  downstream forward: _UP4_TAATATTGTTTGCCATACAA
References
11756427,22020104,24127574

C2EB2BE786A5C155DE440E52CB430B25E70C8AA7

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Time of last update: 2024-03-27 20:22:40

Author of last update: Melvin.boenninger