Difference between revisions of "YddT"

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|style="background:#ABCDEF;" align="center"| '''Gene length, protein length''' || 684 bp, 228 aa  
 
|style="background:#ABCDEF;" align="center"| '''Gene length, protein length''' || 684 bp, 228 aa  
 
|-
 
|-
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[ydzM]]'', ''[[ydeA]]''
+
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[ydzM]]'', ''[[ydzN]]''
 
|-
 
|-
 
|colspan="2" style="background:#FAF8CC;" align="center"|'''Get the DNA and protein [http://srs.ebi.ac.uk/srsbin/cgi-bin/wgetz?-e+&#91;EMBLCDS:CAB12317&#93;+-newId sequences] <br/> (Barbe ''et al.'', 2009)'''
 
|colspan="2" style="background:#FAF8CC;" align="center"|'''Get the DNA and protein [http://srs.ebi.ac.uk/srsbin/cgi-bin/wgetz?-e+&#91;EMBLCDS:CAB12317&#93;+-newId sequences] <br/> (Barbe ''et al.'', 2009)'''

Revision as of 10:48, 29 November 2012

  • Description: unknown essential gene

Gene name yddT
Synonyms
Essential yes PubMed
Product unknown
Function unknown
Gene expression levels in SubtiExpress: yddT
MW, pI 25 kDa, 9.546
Gene length, protein length 684 bp, 228 aa
Immediate neighbours ydzM, ydzN
Get the DNA and protein sequences
(Barbe et al., 2009)
Genetic context
YddT context.gif
This image was kindly provided by SubtiList
Expression at a glance   PubMed
500px
















Categories containing this gene/protein

essential genes, proteins of unknown function

This gene is a member of the following regulons

AbrB regulon

The gene

Basic information

  • Locus tag: BSU05100

Phenotypes of a mutant

essential PubMed

Database entries

  • DBTBS entry: no entry
  • SubtiList entry: [1]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Protein family:
  • Paralogous protein(s): YomL (the two proteins differ in only 4 out of 228 amino acids)

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:

Database entries

  • Structure:
  • KEGG entry: [2]
  • E.C. number:

Additional information

Expression and regulation

  • Sigma factor:
  • Regulation:
  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

Additional publications: PubMed

Helena B Thomaides, Ella J Davison, Lisa Burston, Hazel Johnson, David R Brown, Alison C Hunt, Jeffery Errington, Lloyd Czaplewski
Essential bacterial functions encoded by gene pairs.
J Bacteriol: 2007, 189(2);591-602
[PubMed:17114254] [WorldCat.org] [DOI] (P p)