ydbM

168

acyl-CoA dehydrogenase

locus: BSU_04520

Molecular weight: 41.98 kDa

pI: 5.72

Protein length: 381 aa

Gene length: 1146 bp

function: sulphur metabolism

product: acyl-CoA dehydrogenase

essential: no

synonyms: ydbM

List of homologs in different organisms, belongs to COG1960 (Galperin et al., 2021)

Gene

Coordinates: 505,152  506,297

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The protein

Protein family

• [wiki|Acyl-CoA dehydrogenase family] (according to UniProt)

[wiki|Cofactors]

• FAD (according to UniProt) [Pubmed|21635694]

Structure

• [PDB|3MXL] (from ''Micromonospora carbonacea var. africana'', 30% identity) [Pubmed|20866105]
• [AF|P96608]

Biological materials

Mutant

• MGNA-C119 (ydbM::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/2117 NBRP B. subtilis, Japan]
• BKE04520 ([gene|7B27ADD1CC7A9BCE0F602FA080B5FD0DB66380A0|ydbM]::erm  trpC2) available at [http://bgsc.org/getdetail.php?bgscid=BKE04520 BGSC],  [Pubmed|28189581], upstream reverse: _UP1_CATCCGGCAGCCCCCCAGTT,  downstream forward: _UP4_TAAAAAAAAGAGCCTTACCG
• BKK04520 ([gene|7B27ADD1CC7A9BCE0F602FA080B5FD0DB66380A0|ydbM]::kan  trpC2) available at [http://bgsc.org/getdetail.php?bgscid=BKK04520 BGSC],  [Pubmed|28189581], upstream reverse: _UP1_CATCCGGCAGCCCCCCAGTT,  downstream forward: _UP4_TAAAAAAAAGAGCCTTACCG

References

• 16513748,16513748,20866105