Difference between revisions of "YdbM"

From SubtiWiki
Jump to: navigation, search
Line 120: Line 120:
  
 
* '''Additional information:'''
 
* '''Additional information:'''
 +
** number of protein molecules per cell (minimal medium with glucose and ammonium): 82 {{PubMed|24696501}}
  
 
=Biological materials =
 
=Biological materials =

Revision as of 10:03, 17 April 2014

  • Description: acyl-CoA dehydrogenase

Gene name ydbM
Synonyms
Essential no
Product acyl-CoA dehydrogenase
Function sulphur metabolism
Gene expression levels in SubtiExpress: ydbM
MW, pI 41 kDa, 5.721
Gene length, protein length 1143 bp, 381 aa
Immediate neighbours ydbL, fbpB
Sequences Protein DNA DNA_with_flanks
Genetic context
YdbM context.gif
This image was kindly provided by SubtiList
Expression at a glance   PubMed
YdbM expression.png
























Categories containing this gene/protein

poorly characterized/ putative enzymes

This gene is a member of the following regulons

CymR regulon

The gene

Basic information

  • Locus tag: BSU04520

Phenotypes of a mutant

Database entries

  • DBTBS entry: [1]
  • SubtiList entry: [2]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Protein family: acyl-CoA dehydrogenase family (according to Swiss-Prot)
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:

Database entries

  • Structure:
  • KEGG entry: [3]
  • E.C. number:

Additional information

Expression and regulation

  • Operon: ydbM (according to DBTBS)
  • Sigma factor:
  • Regulation:
    • repressed in the presence of cysteine (CymR) PubMed
  • Regulatory mechanism:
  • Additional information:
    • number of protein molecules per cell (minimal medium with glucose and ammonium): 82 PubMed

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

Sergine Even, Pierre Burguière, Sandrine Auger, Olga Soutourina, Antoine Danchin, Isabelle Martin-Verstraete
Global control of cysteine metabolism by CymR in Bacillus subtilis.
J Bacteriol: 2006, 188(6);2184-97
[PubMed:16513748] [WorldCat.org] [DOI] (P p)