Difference between revisions of "YdaP"

From SubtiWiki
Jump to: navigation, search
m (Reverted edits by Jstuelk (talk) to last revision by 134.76.70.252)
(VRINLsGpxyqAyU)
Line 1: Line 1:
 
+
SNsopd <a href="http://ohifoairszfj.com/">ohifoairszfj</a>, [url=http://qwuwzotzbdmt.com/]qwuwzotzbdmt[/url], [link=http://jztsqfdvnvva.com/]jztsqfdvnvva[/link], http://aowtuvrqsbfy.com/
 
 
{| align="right" border="1" cellpadding="2"
 
|-
 
|style="background:#ABCDEF;" align="center"|'''Gene name'''
 
|''ydaP''
 
|-
 
|style="background:#ABCDEF;" align="center"| '''Synonyms''' || '' ''
 
|-
 
|style="background:#ABCDEF;" align="center"| '''Essential''' || no
 
|-
 
|style="background:#ABCDEF;" align="center"| '''Product''' || putative glyoxalate carboligase
 
|-
 
|style="background:#ABCDEF;" align="center"|'''Function''' || utilization of glycolate and glyoxylate
 
|-
 
|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://cellpublisher.gobics.de/subtiexpress/ ''Subti''Express]''': [http://cellpublisher.gobics.de/subtiexpress/bsu/BSU04340 ydaP]
 
|-
 
|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 62 kDa, 5.217  
 
|-
 
|style="background:#ABCDEF;" align="center"| '''Gene length, protein length''' || 1722 bp, 574 aa
 
|-
 
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[mutT]]'', ''[[ydzK]]''
 
|-
 
|colspan="2" style="background:#FAF8CC;" align="center"|'''Get the DNA and protein [http://srs.ebi.ac.uk/srsbin/cgi-bin/wgetz?-e+&#91;EMBLCDS:CAB12241&#93;+-newId sequences] <br/> (Barbe ''et al.'', 2009)'''
 
|-
 
|colspan="2" | '''Genetic context''' <br/> [[Image:ydaP_context.gif]]
 
<div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div>
 
|-
 
|colspan="2" |'''[http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=ydaP_488830_490554_1 Expression at a glance]'''&#160;&#160;&#160;{{PubMed|22383849}}<br/>[[Image:ydaP_expression.png|500px]]
 
|-
 
|}
 
 
 
__TOC__
 
<br/><br/><br/><br/>
 
<br/><br/><br/><br/>
 
<br/><br/><br/><br/>
 
<br/><br/><br/><br/>
 
<br/><br/><br/><br/>
 
 
 
 
 
<br/><br/>
 
 
 
= [[Categories]] containing this gene/protein =
 
{{SubtiWiki category|[[general stress proteins (controlled by SigB)]]}},
 
{{SubtiWiki category|[[poorly characterized/ putative enzymes]]}}
 
 
 
= This gene is a member of the following [[regulons]] =
 
{{SubtiWiki regulon|[[SigB regulon]]}}
 
 
 
=The gene=
 
 
 
=== Basic information ===
 
 
 
* '''Locus tag:''' BSU04340
 
 
 
===Phenotypes of a mutant ===
 
 
 
=== Database entries ===
 
 
 
* '''DBTBS entry:''' [http://dbtbs.hgc.jp/COG/prom/ydaP.html]
 
 
 
* '''SubtiList entry:''' [http://genolist.pasteur.fr/SubtiList/genome.cgi?gene_detail+BG12063]
 
 
 
=== Additional information===
 
 
 
 
 
 
 
 
 
=The protein=
 
 
 
=== Basic information/ Evolution ===
 
 
 
* '''Catalyzed reaction/ biological activity:'''
 
 
 
* '''Protein family:'''
 
 
 
* '''Paralogous protein(s):'''
 
 
 
=== Extended information on the protein ===
 
 
 
* '''Kinetic information:'''
 
 
 
* '''Domains:'''
 
 
 
* '''Modification:'''
 
 
 
* '''Cofactor(s):'''
 
 
 
* '''Effectors of protein activity:'''
 
 
 
* '''[[SubtInteract|Interactions]]:'''
 
 
 
* '''[[Localization]]:'''
 
 
 
=== Database entries ===
 
 
 
* '''Structure:'''
 
 
 
* '''UniProt:''' [http://www.uniprot.org/uniprot/P96591 P96591]
 
 
 
* '''KEGG entry:''' [http://www.genome.jp/dbget-bin/www_bget?bsu:BSU04340]
 
 
 
* '''E.C. number:'''
 
 
 
=== Additional information===
 
 
 
=Expression and regulation=
 
 
 
* '''Operon:''' ''ydaP'' {{PubMed|10220166}}
 
 
 
* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=ydaP_488830_490554_1 ydaP] {{PubMed|22383849}}
 
 
 
* '''Sigma factor:''' [[SigB]] [http://www.ncbi.nlm.nih.gov/pubmed/15805528 PubMed]
 
 
 
* '''Regulation:'''  induced by stress ([[SigB]]) [http://www.ncbi.nlm.nih.gov/pubmed/15805528 PubMed]
 
 
 
* '''Regulatory mechanism:'''
 
 
 
* '''Additional information:'''
 
 
 
=Biological materials =
 
 
 
* '''Mutant:''' GP457 (spc), available in [[Stülke]] lab
 
 
 
* '''Expression vector:'''
 
       
 
* '''lacZ fusion:'''
 
 
 
* '''GFP fusion:'''
 
 
 
* '''two-hybrid system:'''
 
 
 
* '''Antibody:'''
 
 
 
=Labs working on this gene/protein=
 
 
 
=Your additional remarks=
 
 
 
=References=
 
 
 
<pubmed>10220166,,15805528, </pubmed>
 
 
 
[[Category:Protein-coding genes]]
 

Revision as of 17:04, 7 August 2012

SNsopd <a href="http://ohifoairszfj.com/">ohifoairszfj</a>, [url=http://qwuwzotzbdmt.com/]qwuwzotzbdmt[/url], [link=http://jztsqfdvnvva.com/]jztsqfdvnvva[/link], http://aowtuvrqsbfy.com/