Difference between revisions of "YdaO"
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* '''Description:''' unknown <br/><br/> | * '''Description:''' unknown <br/><br/> | ||
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= [[Categories]] containing this gene/protein = | = [[Categories]] containing this gene/protein = | ||
| + | {{SubtiWiki category|[[membrane proteins]]}}, | ||
{{SubtiWiki category|[[proteins of unknown function]]}} | {{SubtiWiki category|[[proteins of unknown function]]}} | ||
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=== Additional information=== | === Additional information=== | ||
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* '''[[Localization]]:''' | * '''[[Localization]]:''' | ||
| + | ** cell membrane (according to [http://www.uniprot.org/uniprot/P96589 UniProt]) | ||
=== Database entries === | === Database entries === | ||
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* '''Regulation:''' | * '''Regulation:''' | ||
| − | ** | + | ** induced if the energy charge is low ([[ydaO riboswitch]]) {{PubMed|23086297}} |
* '''Regulatory mechanism:''' | * '''Regulatory mechanism:''' | ||
| + | ** expression is controlled via termination antitermination by the [[ydaO riboswitch]] {{PubMed|23086297,20511502}} | ||
* '''Additional information:''' | * '''Additional information:''' | ||
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=References= | =References= | ||
| − | <pubmed>15096624,20511502, </pubmed> | + | <pubmed>15096624,20511502, 23086297 </pubmed> |
[[Category:Protein-coding genes]] | [[Category:Protein-coding genes]] | ||
Revision as of 15:31, 23 October 2012
- Description: unknown
| Gene name | ydaO |
| Synonyms | |
| Essential | no |
| Product | unknown |
| Function | unknown |
| Gene expression levels in SubtiExpress: ydaO | |
| MW, pI | 66 kDa, 9.929 |
| Gene length, protein length | 1821 bp, 607 aa |
| Immediate neighbours | ydaN, mutT |
| Get the DNA and protein sequences (Barbe et al., 2009) | |
Genetic context 
This image was kindly provided by SubtiList
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Expression at a glance PubMed
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Contents
Categories containing this gene/protein
membrane proteins, proteins of unknown function
This gene is a member of the following regulons
The gene
Basic information
- Locus tag: BSU04320
Phenotypes of a mutant
Database entries
- DBTBS entry: no entry
- SubtiList entry: [1]
Additional information
The protein
Basic information/ Evolution
- Catalyzed reaction/ biological activity:
- Protein family:
- Paralogous protein(s):
Extended information on the protein
- Kinetic information:
- Domains:
- Modification:
- Cofactor(s):
- Effectors of protein activity:
- Localization:
- cell membrane (according to UniProt)
Database entries
- Structure:
- UniProt: P96589
- KEGG entry: [2]
- E.C. number:
Additional information
Expression and regulation
- Operon:
- Sigma factor:
- Regulation:
- induced if the energy charge is low (ydaO riboswitch) PubMed
- Regulatory mechanism:
- expression is controlled via termination antitermination by the ydaO riboswitch PubMed
- Additional information:
Biological materials
- Expression vector:
- lacZ fusion:
- GFP fusion:
- two-hybrid system:
- Antibody:
Labs working on this gene/protein
Your additional remarks
References
Peter Y Watson, Martha J Fedor
The ydaO motif is an ATP-sensing riboswitch in Bacillus subtilis.
Nat Chem Biol: 2012, 8(12);963-5
[PubMed:23086297]
[WorldCat.org]
[DOI]
(I p)
Kirsten F Block, Ming C Hammond, Ronald R Breaker
Evidence for widespread gene control function by the ydaO riboswitch candidate.
J Bacteriol: 2010, 192(15);3983-9
[PubMed:20511502]
[WorldCat.org]
[DOI]
(I p)
Jeffrey E Barrick, Keith A Corbino, Wade C Winkler, Ali Nahvi, Maumita Mandal, Jennifer Collins, Mark Lee, Adam Roth, Narasimhan Sudarsan, Inbal Jona, J Kenneth Wickiser, Ronald R Breaker
New RNA motifs suggest an expanded scope for riboswitches in bacterial genetic control.
Proc Natl Acad Sci U S A: 2004, 101(17);6421-6
[PubMed:15096624]
[WorldCat.org]
[DOI]
(P p)
