Difference between revisions of "YdaK"
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| − | + | * '''Description:''' general stress protein, potential diguanylate cyclase <br/><br/> | |
| − | * '''Description:''' potential diguanylate cyclase <br/><br/> | ||
{| align="right" border="1" cellpadding="2" | {| align="right" border="1" cellpadding="2" | ||
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= [[Categories]] containing this gene/protein = | = [[Categories]] containing this gene/protein = | ||
| + | {{SubtiWiki category|[[general stress proteins (controlled by SigB)]]}}, | ||
{{SubtiWiki category|[[metabolism of signalling nucleotides]]}} | {{SubtiWiki category|[[metabolism of signalling nucleotides]]}} | ||
= This gene is a member of the following [[regulons]] = | = This gene is a member of the following [[regulons]] = | ||
| − | + | {{SubtiWiki regulon|[[SigB regulon]]}} | |
=The gene= | =The gene= | ||
| Line 102: | Line 102: | ||
=Expression and regulation= | =Expression and regulation= | ||
| − | * '''Operon:''' ''[[ydaJ]]-[[ydaK]]-[[ydaL]]-[[ydaM]]-[[ydaN]]'' | + | * '''Operon:''' ''[[ydaJ]]-[[ydaK]]-[[ydaL]]-[[ydaM]]-[[ydaN]]'' {{PubMed|22383849}} |
* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=ydaK_480013_480864_1 ydaK] {{PubMed|22383849}} | * '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=ydaK_480013_480864_1 ydaK] {{PubMed|22383849}} | ||
| − | * '''Sigma factor:''' | + | * '''[[Sigma factor]]:''' [[SigB]] {{PubMed|22383849}} |
* '''Regulation:''' | * '''Regulation:''' | ||
| + | ** expressed during stress ([[SigB]]) {{PubMed|22383849}} | ||
* '''Regulatory mechanism:''' | * '''Regulatory mechanism:''' | ||
| Line 133: | Line 134: | ||
=References= | =References= | ||
| − | + | <pubmed>22383849 22821967</pubmed> | |
| − | <pubmed> </pubmed> | + | |
[[Category:Protein-coding genes]] | [[Category:Protein-coding genes]] | ||
Revision as of 11:50, 23 May 2013
* Description: general stress protein, potential diguanylate cyclase
| Gene name | ydaK |
| Synonyms | |
| Essential | no |
| Product | potential diguanylate cyclase |
| Function | unknown |
| Gene expression levels in SubtiExpress: ydaK | |
| MW, pI | 32 kDa, 6.695 |
| Gene length, protein length | 849 bp, 283 aa |
| Immediate neighbours | ydaJ, ydaL |
| Sequences | Protein DNA DNA_with_flanks |
Genetic context 
This image was kindly provided by SubtiList
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Expression at a glance PubMed
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Contents
Categories containing this gene/protein
general stress proteins (controlled by SigB), metabolism of signalling nucleotides
This gene is a member of the following regulons
The gene
Basic information
- Locus tag: BSU04280
Phenotypes of a mutant
Database entries
- DBTBS entry: no entry
- SubtiList entry: [1]
Additional information
The protein
Basic information/ Evolution
- Catalyzed reaction/ biological activity:
- Protein family:
- Paralogous protein(s):
Extended information on the protein
- Kinetic information:
- Domains:
- contains a C-terminal GGDEF domain PubMed
- Modification:
- Cofactor(s):
- Effectors of protein activity:
Database entries
- Structure:
- UniProt: P96585
- KEGG entry: [2]
- E.C. number:
Additional information
Expression and regulation
- Regulatory mechanism:
- Additional information:
Biological materials
- Mutant:
- Expression vector:
- lacZ fusion:
- GFP fusion:
- two-hybrid system:
- Antibody:
Labs working on this gene/protein
Your additional remarks
References
